TCONS_00057922-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057922-protein
Unique NameTCONS_00057922-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057922-protein ID=TCONS_00057922-protein|Name=TCONS_00057922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MKLLKFAFVFLLVVCLLTTEADAKKKKKKKTKKNKKIIIDNFNRRTTTTT
TTTTTTQNLPTELPITESPELPKDEGPQIYVPGDILDKLSNAQNDVTSFV
KSFKPVGVQQKGNVLSYITGGESNEVIKWASTIDTGCKPREKLECIEENS
YLVWPGIQKVMRCGECCVLPGQVCKPTKKRKEYQYFFKIPSDGSPCVPIK
RELTHHEACECQCRISPEDCLPQQTFNKHHCQCECNLKPQPCPPGKSWSY
HTCGCACNDKERACLKLSRKMIWDDRNCECVCNKEKEACTERGKLLDMSD
CRCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036524XLOC_036524Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057922TCONS_00057922Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000072PDGF/VEGF_dom
IPR029034Cystine-knot_cytokine
IPR027928VEGF_C
IPR004153CXCXC_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0008083growth factor activity
GO:0008201heparin binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0008083 growth factor activity
molecular_function GO:0008201 heparin binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000072PDGF/VEGF domainPFAMPF00341PDGFcoord: 144..211
e-value: 1.3E-4
score: 22.1
IPR000072PDGF/VEGF domainPROSITEPS50278PDGF_2coord: 149..216
score: 11.894
IPR029034Cystine-knot cytokineGENE3D2.10.90.10coord: 17..205
e-value: 8.0E-13
score: 48.0
IPR029034Cystine-knot cytokineSUPERFAMILY57501Cystine-knot cytokinescoord: 134..217
IPR027928Vascular endothelial growth factor, heparin-binding domainGENE3D2.10.160.10coord: 264..304
e-value: 0.002
score: 17.7
coord: 206..237
e-value: 0.016
score: 14.8
IPR004153CXCXC repeatPFAMPF03128CXCXCcoord: 271..282
e-value: 0.0038
score: 17.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..74

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057922-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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