TCONS_00058346-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058346-protein
Unique NameTCONS_00058346-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058346-protein ID=TCONS_00058346-protein|Name=TCONS_00058346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
QIIKNSDKKKKMSAKSRGKGKEKASKDKNKRDKSSKKDGKYSVPRLVELE
NNFLLRMPEPFASNLQEALENGGLKDRLQVEFKEDGRKARVVFDGVTFSA
TLLDLPCIIESWKTFDKKSMWKTGDVCQMLVCRDPEEPSFSSDEEENSTF
DYFKKRLNDVKKYQYPHGITAPLKNVRKRRFRKTAKQKYVDAPEIEKEVK
RLLRADVSAVNVSFDVIDDQEKAKPEELTEDIDVDVDVGGPSIDHFDENS
NMSSIMMDASDSEQPPEAVTPVGEGEGGGINILPDISSSEDEGDGGDGVD
GGLENLIEQRAQIQQQLRDIQGKIHEQETRVGNAANPFLKQRFQSVLNEM
QEQERSLQQQFANLS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036755XLOC_036755Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058346TCONS_00058346Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005669transcription factor TFIID complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005669 transcription factor TFIID complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 340..360
NoneNo IPR availableCOILSCoilCoilcoord: 303..330
NoneNo IPR availableGENE3D1.20.1170.10coord: 62..365
e-value: 1.1E-4
score: 20.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 258..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..43
IPR006751TAFII55 protein, conserved regionSMARTSM01370TAFII55_N_2coord: 49..211
e-value: 4.3E-80
score: 282.1
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 49..209
e-value: 1.1E-55
score: 187.6
IPR006751TAFII55 protein, conserved regionCDDcd08047TAF7coord: 50..217
e-value: 4.12853E-58
score: 187.091

Blast
[Close]
BLAST of TCONS_00058346-protein vs. Swiss-Prot (Human)
Match: TAF7 (Transcription initiation factor TFIID subunit 7 OS=Homo sapiens GN=TAF7 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.253e-51
Identity = 121/327 (37.00%), Postives = 180/327 (55.05%), Query Frame = 0 
Query:   48 ELENNFLLRMPEPFASNLQEALENG--GLKDRLQVEFKEDGRKARVVFDGVTFSATLLDLPCIIESWKTFDKKSMWKTGDVCQMLVCR-------DPEEPSFSSDEEENSTFDYFKKRLNDVKKYQYPHGITAPLKNVRKRRFRKTAKQKYVDAPEIEKEVKRLLRADVSAVNVSFDVIDDQEKAKPEELTEDIDVDVDVGGPSIDHFDENSNMSSIMMDASDSEQPPEAVTPVGEGEGGGINILPD----ISSSEDEGDGGDGVDGGLENLIEQRAQIQQQLRDIQGKIHE-------QETRVGNAANPFLKQRFQSVLNEMQEQE 354
            ELE+ F+LR+P  +AS ++ A+++G   LKDRL +E   DGR   V  D V  ++ L+DLPC++ES KT DKK+ +KT D+CQMLV           EEP  S+D + +   D  K+     KK+ + HGIT PLKNVRKRRFRKTAK+KY+++P++EKEVKRLL  D  AV+  +++I + E  + E    DI      G        E+  +  I  D S S +  +      E +   I+   D    +    +E D     + G   L+     IQ+Q+ +++GK+ E       QE  +    N  LK RFQ+VL+E++++E
Sbjct:   11 ELESQFILRLPPEYASTVRRAVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKE-----KKFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQGLDISSPGMSGHRQGHDSLEHDELREIFNDLSSSSEDEDETQHQDEEDINIIDTEEDLERQLQDKLNESDEQHQENEGTNQLV---MGIQKQIDNMKGKLQETQDRAKRQEDLIMKVENLALKNRFQAVLDELKQKE 329
The following BLAST results are available for this feature:
BLAST of TCONS_00058346-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAF76.253e-5137.00Transcription initiation factor TFIID subunit 7 OS... [more]
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