TCONS_00058445-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00058445-protein
Unique NameTCONS_00058445-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00058445-protein ID=TCONS_00058445-protein|Name=TCONS_00058445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=711bp
MNMDSEVLILLVVGCSLLIGNSHGKLTLNYWPKGESYNTVFVSGQTLLRC
DVDSDRSFQLKWYKDGKELDFSTIKFPLWGFKFKDGSGGTLWQWPYHKDF
LKDPAVFECRATNGVDPPVSKKVKFTPLDAHKLPADYPKKVDNAKQEKYP
EKVFYGSNLTFYCDAKGGTNLDYQWFYNRLPLGKIDAKRSRAVRLDYKLS
ADRRILNIFNIQETPQQEAINFQCMVSNNVGLLNALMFSVATMPKPTPAI
PPMVPRLTVRPQNVSVGGPEQWVEFDCAAVGHPTPLYWWYHDGLVVQAGA
ETGKVSVVAMRSGSIMCHPWNKYGSTNATAYLTVTPLPYRPNPIKIAGTS
VKHITIEITPNYREAEWHPDIPVNEIIIQHRPYVFNQPVETAFNVTKFKT
GGKPAPWRYTFDGLEPWIYIDFRVKLVNKYGVSNVSEWYHGQTDWGAITE
PVRNLKATPLSPKSFRVQWEDPPKTNGPLTRYEFYYTTRPNADIKNWIMH
GVDPTDQHYAVNWTDNPRYTEVAPVLYWKVRLVGFVNEGPFSETKAFKCL
PGAPGFVTNVKLKVLTSRTIEVSWTPAENKGSGITGHDILFNRADIPKIE
RLWNIHTLKDPKENKVVVSNLLPNRPYEFKIYARTKESQGVPSEIVKTKT
IEDAPSAPPQNVRGTAKHSQTLVISWDPPPVDHQNSPITGYTLYYSFHDR
DPSTKEIGKND
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_036828XLOC_036828Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00058445TCONS_00058445Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 338..433
e-value: 4.0
score: 14.9
coord: 655..710
e-value: 120.0
score: 2.2
coord: 449..539
e-value: 55.0
score: 5.0
coord: 554..640
e-value: 1.6E-8
score: 44.3
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 658..696
e-value: 4.4E-6
score: 26.8
coord: 557..643
e-value: 3.4E-11
score: 43.2
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 556..653
score: 18.217
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 451..552
score: 11.724
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 658..711
score: 14.036
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 340..446
score: 9.129
IPR003961Fibronectin type IIICDDcd00063FN3coord: 450..511
e-value: 5.32312E-5
score: 40.9427
IPR003961Fibronectin type IIICDDcd00063FN3coord: 658..695
e-value: 2.44662E-5
score: 42.0983
IPR003961Fibronectin type IIICDDcd00063FN3coord: 554..650
e-value: 8.28954E-14
score: 67.1363
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 553..702
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 365..553
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 135..235
e-value: 8.0E-6
score: 25.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 551..656
e-value: 9.9E-20
score: 70.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 333..442
e-value: 1.9E-4
score: 21.1
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 657..710
e-value: 7.1E-11
score: 41.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 34..126
e-value: 9.9E-5
score: 21.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 252..332
e-value: 2.5E-8
score: 33.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 443..550
e-value: 1.6E-10
score: 40.5
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 32..126
score: 7.177
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 255..335
score: 7.649
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 138..239
score: 7.468
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 39..134
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 251..341
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 152..248
NoneNo IPR availableCDDcd00096Igcoord: 48..117
e-value: 0.00229342
score: 35.9279

Blast
[Close]
BLAST of TCONS_00058445-protein vs. Swiss-Prot (Human)
Match: PTPRS (Receptor-type tyrosine-protein phosphatase S OS=Homo sapiens GN=PTPRS PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 4.301e-53
Identity = 178/676 (26.33%), Postives = 296/676 (43.79%), Query Frame = 0 
Query:   50 CDVDSDRSFQLKWYKDGKELD---FSTIKFPLWGFKFKDGSGGTLWQWPYHKDFLKDPAVFECRATNGVDPPVSKKVKFTPLDAHKLPADYPKKVDNAKQEKYPEKVFYGSNLTFYCDAKGGTNLDYQWFYNRLPL------GKIDAKRSRAVRLDYKLSADRRILNIFNIQETPQQEAINFQCMVSNNVGLLNALMFSVATMPKPTPAIPPMVPRLTVRPQNVSVGGPEQWVEFDCAAVGHPTPLYWWYH--DGLVVQAGAETGKVSVVAMR----SGSIMCHPWNKYGSTNATAYLTVTPLPYRPNPIKIAGTSVKHITIEITPNYREAEWHPDIPVNEIIIQHRPYVFNQPVETAFNVTKFKTGGKPAPWRYTFDGLEPWIYIDFRVKLVNKYGVSNVSEWYHGQTDWGAITEPVRNLKATPLSPKSFRVQWEDPPKTNGPLTRYEFYYTTRPNADIKNWIMHGVDPTDQHYAVNWTDNPRYTEVAPVLYWKVRLVGF--VNEGPFSETKAFKCLPGAPGFVTNVKLKVLTSRTIEVSWTPAENKGSGITGHDILFNRADIPKIERLWNIHTLKDPKENKVVVSNLLPNRPYEFKIYARTKESQGVPSEIVKTKTIEDAPSAPPQNVRGTAKHSQTLVISWDPPPVDHQNSPITGYTLYYS-FHDRDPSTKEI 707
            C    D   ++ W K GK+++   F TI+F        + +G  L   P      +D  V+EC A N V   ++   K T L   +LP+ +P  +D   Q K  E+       T  C A G  + +  WF + LP+      G+I   RS      ++ +  R  L I + +ET Q +   ++C+ +N+ G+  +   ++    +    +  + PR ++ P +  +  P   V   C AVG P P   W    + L  +     G+ +V+ +     S +  C   +  G   A A +TV  LP  P    +   +   ITI           +PD PV+  +I+++    + P +   ++T           RY+  GL P    +  V  VN  G    SE    +T   A     RN++A  LS  +  VQWE+P + NG +  Y  YYT  P   + NW  H VD +      +  ++  YT         VR++ F  V +GP S+    K   G PG   N++ +  +  +I +SW+P   +   I  +++LF   D  +      +    DP     VV +L PN  Y F++ AR+ +  G  + +V+ +T++  PSAPPQ+V+  +  S  +++SW PPP +  N  + GY++ Y      DP  KE+
Sbjct:   54 CQATGDPKPRVTWNKKGKKVNSQRFETIEF-------DESAGAVLRIQPLRTP--RDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPN-IDMGPQLKVVERT---RTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSET----FESTPIRGALQIESSEETDQGK---YECVATNSAGVRYSSPANLYV--RELREVRRVAPRFSILPMSHEIM-PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGR-NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAPGTPMVTENTATSITITWDSG------NPD-PVSYYVIEYKSKSQDGPYQIKEDITT---------TRYSIGGLSPNSEYEIWVSAVNSIGQGPPSESVVTRTGEQAPASAPRNVQARMLSATTMIVQWEEPVEPNGLIRGYRVYYTMEPEHPVGNWQKHNVDDSLLTTVGSLLEDETYT---------VRVLAFTSVGDGPLSDPIQVKTQQGVPGQPMNLRAEARSETSITLSWSPPRQES--IIKYELLFREGDHGR-----EVGRTFDPT-TSYVVEDLKPNTEYAFRLAARSPQGLGAFTPVVRQRTLQSKPSAPPQDVKCVSVRSTAILVSWRPPPPETHNGALVGYSVRYRPLGSEDPEPKEV 671
The following BLAST results are available for this feature:
BLAST of TCONS_00058445-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PTPRS4.301e-5326.33Receptor-type tyrosine-protein phosphatase S OS=Ho... [more]
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