TCONS_00058688-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058688-protein
Unique Name	TCONS_00058688-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1114

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058688-protein ID=TCONS_00058688-protein|Name=TCONS_00058688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1114bp
KEGFSTTSQNYQNQDSIANVKRTNRSVDKKATTVKRVSTSNKNIRNSTPR
PPPISAGNNKTNQFTQQSSTNPSVKKPSIERQRKTAVVGKSKQPGKTNIQ
ECQQNFKREASFIRSTSKDSTEENGKVNIDAMTETLIYPYFTNSTMDQPP
NKALPLVPDEAPKKQLPLAPDDYSYASIEFRSMALQGNVLVTTAIDDKTK
PPSSEIVESEYSYAPFEPSRPLVVGVGNAVTTPISDEKPLIDIGDSEQED
FLHQSINGDIYALVDKPPKYKAPTKQTPTTDSRRPSAYDVVADPLPQDPI
LEELYASVQKPKPTNSMTLSNRPAPFNNNMMTMNNNNMIYPAGFKPGKKR
VSDGMLNTKYFANNGTSRKPPPMPRPYGLDRKPLSPHIEERLDFNNRATR
STGNVANTSSDSYSEVTIDQTKQPSRFVNLESSDRLTKSYNSDQLGPSIK
QMRTHRRNLSHEDVSIFHRSSIDNSRETLNGHSSAMSDKSSRLSNSSSSI
SNRSEDESFPPRINLATTDYYSRVSTTTDPNNDELPEGWQEVKDDSETYY
WHIWTGTIQYERPTALMTPTSSSRSVSPFNSEPNSRATSITDQTENLKIS
TPSPRPETPDTMKAKQIISFPVHSMGWMDVEEDLMGAQIIGETVNNCITT
LANLRHDLHKTEETWANGEDLKLILEGETLKLVHPETKHVYHKQPIAKMR
VWGVGREGEEKRDFAYIARDQTTQKHKCHMFRCHGHVSGRSVTNALQAIC
TRVLEEKKRAKERENSTVKPPSDLMRPPSKLSGSNFNEKVYPDQKKCFTA
KYVGSAEVAKPSGMEGLNKVVKMLTEGESTSSWPSVLLEVTTSEIKTIDC
LKQETTMEHRVRFVTFLGVATDERFGAYIVAVAKDMFVCHVYFCAPNAGT
LTKAIEEAMKLRFEKMLDSQQIRRPSSDQPAEAPLKLQPVPQPHNQQHQN
QGGISPQRGSVKEKTTKMFTGMFSKFNKGSGRRKEEETPPNSRPSSIAPS
ANEHVIRYFGAIPVTIGTGKEPIEASAKQLGQGEAMLGYLEVDQDCLTLS
DAQRSAISQRIFDVANISYCGTTGDRKFFGVIVSRGKGKFICHVFQEYQP
NTGLEIVDAIHNVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036977	XLOC_036977	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058688	TCONS_00058688	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006020	PTB/PI_dom
IPR011993	PH_dom-like
IPR001202	WW_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006020	PTB/PI domain	SMART	SM00462	PTB_9	coord: 793..922 e-value: 3.0E-17 score: 73.3 coord: 615..763 e-value: 3.1E-10 score: 50.0
IPR006020	PTB/PI domain	PFAM	PF00640	PID	coord: 798..918 e-value: 9.7E-9 score: 35.3 coord: 620..759 e-value: 2.6E-20 score: 72.8
IPR006020	PTB/PI domain	PROSITE	PS01179	PID	coord: 798..925 score: 23.283
IPR006020	PTB/PI domain	PROSITE	PS01179	PID	coord: 618..762 score: 13.995
None	No IPR available	GENE3D	2.20.70.10		coord: 530..571 e-value: 6.7E-7 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 361..514
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 569..611
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 759..785
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 919..960
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 972..999
None	No IPR available	CDD	cd00201	WW	coord: 536..564 e-value: 0.00163117 score: 36.737
None	No IPR available	CDD	cd00934	PTB	coord: 1007..1111 e-value: 2.42878E-8 score: 52.1259
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 572..750 e-value: 1.5E-23 score: 82.7 coord: 943..1113 e-value: 1.7E-11 score: 43.5
IPR011993	PH domain-like	GENE3D	2.30.29.30		coord: 791..928 e-value: 3.8E-23 score: 81.5
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 596..762
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 1006..1102
IPR011993	PH domain-like	SUPERFAMILY	50729	PH domain-like	coord: 789..915
IPR001202	WW domain	PROSITE	PS50020	WW_DOMAIN_2	coord: 533..565 score: 10.108
IPR001202	WW domain	SUPERFAMILY	51045	WW domain	coord: 529..565

Blast

[Close]

BLAST of TCONS_00058688-protein vs. Swiss-Prot (Human)
Match: APBB2 (Amyloid-beta A4 precursor protein-binding family B member 2 OS=Homo sapiens GN=APBB2 PE=1 SV=3)

HSP 1 Score: 246.514 bits (628), Expect = 5.559e-69
Identity = 163/487 (33.47%), Postives = 244/487 (50.10%), Query Frame = 0

Query:  494 SNSSSSISNRSEDESFPPRINLATTDYYSRVSTTTDPNNDELPEGWQEVKDDSETYYWHIWTGTIQYERPTALMTPTSSSR-----SVSPFNSEPNSR-----------ATSITDQTENLKISTPSPRPET--------------------PDTMKAKQIIS------FPVHSMGWMDVEEDLMGAQIIGETVNNCITTLANLRHDLHKTEETWANGEDLKLILEGETLKLVHPETKHVYHKQPIAKMRVWGVGREGEEKRDFAYIARDQTTQKHKCHMFRCHGHVSGRSVTNALQAICTRVLEEKKRAK--------ERENSTVKPPSDLMRPPSKLSGSNFNEKVYPDQKKCFTAKYVGSAEVAKPSGMEGLNKVVKMLTEGESTSSWPSVLLEVTTSEIKTI-DCLKQETTMEHRVRFVTFLGVATDERFGAYIVAVAKDMFVCHVYFCAPNAGTLTKAIEEAMKLRFEKML----DSQQIRRP 925
            S+  SS +  S+D + P   +   TD +S  S  TDP   +LP GW+ V D + TYYWHI TGT Q+ERP ++      SR     SV+P  +  N +               +D  ++L  +T +P P                      PD   +  I S      F V S+GW+++ E+ +        VNNCI  L+  ++D+  T   W  G+D+ LILE + L LV P  + V H QPI  +RVWGVGR+    RDFAY+ARD+ T+  KCH+FRC      +++  +L  IC++++ E+K AK        ER N  +  P  +  P  K       E V   QK  F  +Y+G   V KP GM+ LN  ++ L    +   W SV + V  + +  I +  ++E  +E RVRF++F+GV  D    A+I+      F CHV++C PNAG +++A++ A  LR++K L     SQ++R P
Sbjct:  256 SDEESSWTTLSQDSASPSSPD--ETDIWSDHSFQTDP---DLPPGWKRVSDIAGTYYWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDN--GRDFAYVARDKDTRILKCHVFRC--DTPAKAIATSLHEICSKIMAERKNAKALACSSLQERANVNLDVPLQVDFPTPK------TELV---QK--FHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKEDWLSVNMNVADATVTVISEKNEEEVLVECRVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQKVRPP 722

The following BLAST results are available for this feature:

BLAST of TCONS_00058688-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058688-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
APBB2	5.559e-69	33.47	Amyloid-beta A4 precursor protein-binding family B...	[more]

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TCONS_00058688-protein (polypeptide) - C. hemisphaerica