TCONS_00058980-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058980-protein
Unique Name	TCONS_00058980-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	648

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058980-protein ID=TCONS_00058980-protein|Name=TCONS_00058980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=648bp
STVKFIPNMMFQIIAVKLLLLTNILKFAELALIIQDLTDGTAIDHSLSDD
DSVQISISSPIYLQNSDGSTSPKTSFRISSNGAVFPGDFSDAGSYTLTTF
PDGSFCAYYDDIDMTDCINPCSTKSLRNVGTKTLNILKDHFGIEAIPGSV
LVVTYTDITHHGRTDVNTFQIILCSDSNGGSYYIPSYEKLESEAEFVRAY
LPTHTISFPAPAQNLLCQSNVAYPGTYVVGLNTATKHYYIPPGTSIPMNC
KNCGGTYTLPYDTATCNAEPSCPVTNVLPSGSYTKNCLFLNAKCQADGQI
TATLCPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNT
CVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPT
PEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRS
RVCDDPAPAHGGNDCVGTLTSQRQICNTNYCPEMCDEFFKMCDCIDVPVI
YDMSILTTNSSFYGINDTAVNSSLDAISTWDAEAVKLACKNAECSETSLQ
NAITQIEADINILQSFLDDVTSSIELTRKVISCKANVWGRRGDLFDHYES
LFKRKVIVRQVYQDLEIKKTILEKEKLRCADRSWLREVLEDGTRNFLG

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037149	XLOC_037149	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058980	TCONS_00058980	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000884	TSP1_rpt

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01705	TSP1REPEAT	coord: 407..418 score: 36.24 coord: 388..399 score: 48.29 coord: 370..383 score: 41.45
IPR000884	Thrombospondin type-1 (TSP1) repeat	SMART	SM00209	TSP1_2	coord: 429..482 e-value: 2.6E-13 score: 60.2 coord: 372..424 e-value: 1.5E-12 score: 57.7 coord: 311..367 e-value: 9.4E-4 score: 28.5
IPR000884	Thrombospondin type-1 (TSP1) repeat	GENE3D	2.20.100.10		coord: 307..366 e-value: 2.5E-11 score: 43.2 coord: 368..423 e-value: 1.4E-15 score: 56.8 coord: 425..481 e-value: 1.4E-15 score: 56.9
IPR000884	Thrombospondin type-1 (TSP1) repeat	PFAM	PF00090	TSP_1	coord: 313..366 e-value: 1.3E-4 score: 22.0 coord: 374..423 e-value: 8.4E-11 score: 41.8 coord: 431..481 e-value: 5.4E-10 score: 39.2
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 308..367 score: 10.622
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 426..482 score: 12.955
IPR000884	Thrombospondin type-1 (TSP1) repeat	PROSITE	PS50092	TSP1	coord: 369..424 score: 13.276
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 307..362
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 422..481
IPR000884	Thrombospondin type-1 (TSP1) repeat	SUPERFAMILY	82895	TSP-1 type 1 repeat	coord: 365..423

Blast

[Close]

BLAST of TCONS_00058980-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 3.353e-48
Identity = 80/180 (44.44%), Postives = 105/180 (58.33%), Query Frame = 0

Query:  303 TLCPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 482
             +  ++GGF+ W++W  C+  CG    G+ + RSR C  P P   G  C G   E   C   PCPVDG W+ W+ W  C+  CG G+Q+RTRTC NP+ +HGG PC G+  E   CN  PCP+HG W  W  W  C + CG G Q R+R+C++P PA GG+ C G  T Q Q+CN   CP
Sbjct: 4524 VIVQVHGGFSQWSAWRACSVTCG---KGI-QKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAET-QMQVCNERNCP 4698

HSP 2 Score: 177.948 bits (450), Expect = 1.617e-46
Identity = 78/178 (43.82%), Postives = 99/178 (55.62%), Query Frame = 0

Query:  305 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 482
            CPI+G +  W SW+ C+  CG    G    R+R C++P P Y G  C G   +S  CN+DPCP  G W+ W+ W TCS  C  G   R RTC NP P +GG  C G  ++ Q CNT  CP+ G WG W +W++C   CG G + R R+CD P P  GG  C G  T+Q   CN   CP
Sbjct: 4697 CPIHGKWATWASWSACSVSCG----GGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGD-TTQVTRCNVQACP 4869

HSP 3 Score: 177.563 bits (449), Expect = 2.207e-46
Identity = 78/178 (43.82%), Postives = 104/178 (58.43%), Query Frame = 0

Query:  305 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 482
            CP++G +++W+ W  C   CG  N    +TR+RTC NP+  + G  C G+  E   CN  PCPV G W+ W  W TCS  CG G+Q+R R C NP P  GG+ C G  T+ Q CN   CPIHG+W  W++W+ C   CG G + R+R C DP P +GG  C G+   Q   CN++ CP
Sbjct: 4583 CPVDGSWSEWSLWEECTRSCGRGN----QTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGS-DVQSDFCNSDPCP 4755

HSP 4 Score: 176.792 bits (447), Expect = 4.147e-46
Identity = 76/178 (42.70%), Postives = 104/178 (58.43%), Query Frame = 0

Query:  305 CPINGGFTDWTSWAGCNADCGPTNTGLTETRSRTCTNPAPDYFGNTCVGDLSESSACNADPCPVDGGWTNWANWATCSLPCGTGSQSRTRTCTNPTPEHGGNPCSGDGTESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGNDCVGTLTSQRQICNTNYCP 482
            CP++G ++ W  W  C+  CG      T+TR+R C NP P + G+ C G  ++   CN   CP+ G W  WA+W+ CS+ CG G++ RTR C++P P++GG  C G   +S  CN+ PCP HG W  WS W  C + C  G   R R CD+P P++GG  C G   SQ Q CNT+ CP
Sbjct: 4640 CPVHGAWSAWQPWGTCSESCGKG----TQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCP 4812

The following BLAST results are available for this feature:

BLAST of TCONS_00058980-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058980-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	3.353e-48	44.44	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00058980-protein (polypeptide) - C. hemisphaerica