TCONS_00059441-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059441-protein
Unique NameTCONS_00059441-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059441-protein ID=TCONS_00059441-protein|Name=TCONS_00059441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=372bp
MLRRGSMPSALHSQSIQPNWPMKQKFRGKRQPAYYLQPDYRIHEFNKRLQ
GQSDKNDQTWWDELINEFFEEDASLLIQYKEKNHNKKLMIHRRLIPRYFR
SLFEGGVSKIYYVVLESKESYMNATVSVDCKHASMITHFDQPKNLKVHTD
GHLTIEFAFDSFMRIRHWKFIVKDTTEYLPKSSFNEKDESKAEEMAKNVM
EHGQPPKSLHYLRVGTVLESMFEMMARAKSGTMTPREALKSVLYDKWQAT
MLKMEFETRHRIWNQNTQSRPNNKKRKNRKTPSVSNEPKPPPKKKSPSTS
AFPPMSTSDVMFVDEPVLMGGELGDDDERVITRSIVSNPSSRLLLSTTSS
TNIQMLQQFTKQTTQQLTQMHS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037414XLOC_037414Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059441TCONS_00059441Clytia hemisphaericatranscript
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.890.10coord: 21..300
e-value: 6.1E-4
score: 18.9
NoneNo IPR availablePFAMPF01803LIM_bindcoord: 40..204
e-value: 2.8E-34
score: 118.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 262..307

Blast
[Close]
BLAST of TCONS_00059441-protein vs. Swiss-Prot (Human)
Match: LDB2 (LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 3.238e-77
Identity = 121/314 (38.54%), Postives = 188/314 (59.87%), Query Frame = 0 
Query:   29 KRQPAYYLQPDYRIHEFNKRLQGQSDKNDQTWWDELINEFFEEDASLLIQYKEKNHNKKLMIHRRLIPRYFRSLFEGGVSKIYYVVLESKESYMNATVSVDCKHASMITHFDQPKNLKVHTDGHLTIEFAFDSFMRIRHWKFIVKDTTEYLPKS--SFNEKDESKAEEMAKNVMEHGQPPKSLHYLRVGTVLESMFEMMARAKSGTMTPREALKSVLYDKWQATMLKMEFETRHRIWNQNTQSRPNNKKRKNR-------KTPSVSNEPKPPPKKKSPSTSAFPPMSTSDVMFVDEPVLMGGELGDDDERVITR 333
            +R   Y +QP+YRI+E NKRLQ +++ +D  WWD    EFFE+DA+L + +  ++  K+  I R LIPRYF ++FEGGV+ +YY++  SKESY N++++VDC   +M+T   +P   KV T+G L +EF FD  MRI+ W F ++   E +P+S  + + +D    ++++KN+   G    +L+YLR+  +LE M E+M+R K+  ++PR+ LK+ L+ KWQ  +      TR          +P  K+RK +        + + +N      KKK+ + +        DVM V EP LMGGE GD+DER+ITR
Sbjct:   19 RRHTPYMVQPEYRIYEMNKRLQSRTEDSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYILKHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQYRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYNLSPRDCLKTCLFQKWQRMVAPPAEPTR----------QPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLSSQVPDVMVVGEPTLMGGEFGDEDERLITR 322
The following BLAST results are available for this feature:
BLAST of TCONS_00059441-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB23.238e-7738.54LIM domain-binding protein 2 OS=Homo sapiens GN=LD... [more]
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