TCONS_00059756-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059756-protein
Unique NameTCONS_00059756-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059756-protein ID=TCONS_00059756-protein|Name=TCONS_00059756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
PAVTEKGYIVDFQGDSCGISIEGKRYSVGKKHGKLYKLNTINSDQTCYIG
NAMDEIDLWHQRYGHLGYDNLKLLNKKEMVNGLNFDLEETVNRNCEGCAM
GKQHRQPFPKKSMNTTKGLLELIHSDVCGPMDVPSVGGSRYFVTFIDDYS
RYTTVYMMKHKSEVLAKFTEFVNLVENRTGLKVKRLNVENQTIQRLRSDN
GGEYTSTEFTSFCTDRGISRXXXXXXM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037585XLOC_037585Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059756TCONS_00059756Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025724GAG-pre-integrase_dom
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 34..103
e-value: 4.2E-14
score: 52.1
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 121..220
e-value: 1.1E-15
score: 57.8
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 105..227
score: 12.709
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 111..223
e-value: 7.2E-16
score: 57.9
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 116..220

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059756-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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