TCONS_00059859-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059859-protein
Unique Name	TCONS_00059859-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	455

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059859-protein ID=TCONS_00059859-protein|Name=TCONS_00059859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MLLIILSLIGLSFVQGLPGIVETVAGGGPSHKGKDSECNNFERSKDGVGS
QARFNYPWGIAFDIHNNQVYVADCGCMDSEHRTDLIRRIDLKTHQVTTVA
GSTQGFRDGFGHEAHFQHIAGILLDPELEMLYIADSGNNRIRVMYLSNYK
VDTIAGLSSKGFVDQSVLSSHFNNPQSLALMRDKDSKRSLFVSDTDNHAI
RVVHLESDNTGDVKTIAGGNKGFKDGYKLNARFYFPTQITIDSLGQYVYI
SDHYNHAIRRLEISNGLVTTLSSEGFQIRLDKGAPSPATPTGRPVTIHYP
EGIIYDPDYEALYVCEFQTHVIQVVNLKGFVKPLAGSGFQGRKDGVGQTA
KFYHPSGMTFDRKSRRLFVSDQYNHLVRSISALGSKKKFLRVAKKAEQVI
TNKGSINTFSSSTQTMYIAGGFLLVMFGAVVIRPLFRLVYKLVNSEQSQN
LLYRD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037649	XLOC_037649	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059859	TCONS_00059859	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011042	6-blade_b-propeller_TolB-like
IPR001258	NHL_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011042	Six-bladed beta-propeller, TolB-like	GENE3D	2.120.10.30		coord: 156..280 e-value: 2.3E-10 score: 39.6 coord: 281..422 e-value: 2.9E-11 score: 42.5
IPR011042	Six-bladed beta-propeller, TolB-like	GENE3D	2.120.10.30		coord: 28..155 e-value: 2.2E-10 score: 39.7
IPR001258	NHL repeat	PFAM	PF01436	NHL	coord: 54..75 e-value: 1.8E-4 score: 21.3
None	No IPR available	SUPERFAMILY	101898	NHL repeat	coord: 115..393

Blast

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BLAST of TCONS_00059859-protein vs. Swiss-Prot (Human)
Match: NHLC2 (NHL repeat-containing protein 2 OS=Homo sapiens GN=NHLRC2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.435e-20
Identity = 92/315 (29.21%), Postives = 147/315 (46.67%), Query Frame = 0

Query:   45 KDGVGSQARFNYPWGIAFDIHNNQVYVADCGCMDSEHRTDLIRRIDLKTHQVTTVAG-STQGFRDGFGHEAHFQHIAGIL------LDPELE---MLYIADSGNNRIRVMYLSNYKVDTIAGLSSKGFVDQSVLSSH-------------FNNPQSLALMRDKDSKRSLFVSDTDNHAIRVVHLESDNTGDVKTIAGGNK--------GFKDGYKLNARFYFPTQITIDSLGQYVYISDHYNHAIRRLEISNGLVTTLSSEGFQIRLDKGAPSPATPTGRPVTIHYPEGIIYDPDYEALYVCEFQTHVIQVVNLK 328
            KDG+ S++ FN P G+A  I NN +YVAD           LIR+IDL+  +V+TVAG   QG     G +   Q I+            E++   +L+IA +G ++I  + L + K+     L +KG   +   S +             F  P  L+L  + D    LFV+D+++  +R V L+    G VK + GG +        G  DG  +NA+   P  +T D     +Y++D YNH I+ ++      TTL+  G     D    + ++ T    T + P G+    + E LYV +   H I+V++L+
Sbjct:  269 KDGIFSESTFNSPQGVA--IMNNIIYVADT-------ENHLIRKIDLEAEKVSTVAGIGIQGTDKEGGAKGEQQPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNEL-TKGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASE-DPWSCLFVADSESSTVRTVSLKD---GAVKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDPKTKNCTTLAGTG-----DTNNVTSSSFTES--TFNEPGGLCIGENGELLYVADTNNHQIKVMDLE 562

HSP 2 Score: 90.1225 bits (222), Expect = 3.409e-19
Identity = 86/321 (26.79%), Postives = 142/321 (44.24%), Query Frame = 0

Query:  122 ILLDPELEMLYIADSGNNRIRVMYLSNYKVDTIAGLSSKGFVDQSVLSSHFNNPQSLALMRDKDSKRSLFVSDTDNHAIRVVHLESDNTGDVKTIA-------GGNKGFKDGYKLNARFYFPTQITIDSLGQYVYISDHYNHAIRRL-----------EISNGLVTTLSSEGFQIRLDKGAPSPA---TPTGRPVTIHYPEGIIYDPDYEALYVCEFQTHVIQVVNLK-GFVKPLAGSGFQ-------GRKDGVGQTAKFYHPSGMTFDRKSRRLFVSDQYNHLVRSISALGSKKKFLRVAKKAEQVITNKGSINTFSSST 413
            + +D   + L IAD+G++RI V++  N ++    G  + G  D     S FN+PQ +A+M +      ++V+DT+NH IR + LE++    V  I        GG KG +          F T  +    G  ++I+    H I  L           E++ G     +  G +   +   P  A    P+G  +    P        +  L+V + ++  ++ V+LK G VK L G           G  DGVG  AK  HP G+T+D+K   L+V+D YNH ++ +      K    +A   +   TN  + ++F+ ST
Sbjct:  229 VTVDQVTDRLVIADTGHHRILVVW-KNGQIQYSIGGPNPGRKDGIFSESTFNSPQGVAIMNN-----IIYVADTENHLIRKIDLEAEKVSTVAGIGIQGTDKEGGAKGEQQPISSPWDVVFGTSGSEVQRGDILWIAMAGTHQIWALLLDSGKLPKKNELTKGTCLRFAGSGNEENRNNAYPHKAGFAQPSGLSLASEDP--------WSCLFVADSESSTVRTVSLKDGAVKHLVGGERDPMNLFAFGDVDGVGINAKLQHPLGVTWDKKRNLLYVADSYNHKIKVVDP--KTKNCTTLAGTGD---TNNVTSSSFTEST 530

The following BLAST results are available for this feature:

BLAST of TCONS_00059859-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059859-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NHLC2	2.435e-20	29.21	NHL repeat-containing protein 2 OS=Homo sapiens GN...	[more]

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TCONS_00059859-protein (polypeptide) - C. hemisphaerica