TCONS_00060587-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060587-protein
Unique NameTCONS_00060587-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060587-protein ID=TCONS_00060587-protein|Name=TCONS_00060587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MGKKVAEEEGWDHEKLAKVKLKVLRGHIGGVQTCCFLDGQSLVLSGGVDK
TLKIWDIQDGSCRETLIGHKAEVTCTRSTKDGRRIVSSGLDKYLIVWDGT
TGQPILESRHEGMVMSCDISYDGRYMLSGTDLDNVVVIWDLRQDKSIKML
KHHNNTVMCVRFAPSSYQFCSSGMDFTSVVCDMQNYRNERDPHAVIRLGG
HINMISSCDFSGDERRLCTGSWDKTIKVWDLNSGSYRTSGPVSLDKVHEG
CVSACRFSKDGSTIMSANYDQSLIMWDADNACVNFTLQGHTGWVTDCDFS
ADELGVISSSKDGTIRYWDILRKDEIPVVLQNKKTIGLRLLKCHECQKQF
SITQAQNADAIKLCVFCRLEYEKRVS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038108XLOC_038108Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060587TCONS_00060587Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 306..320
score: 36.85
coord: 43..57
score: 36.0
coord: 217..231
score: 44.23
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 17..56
e-value: 1.1E-6
score: 38.3
coord: 101..140
e-value: 9.7E-4
score: 28.4
coord: 191..230
e-value: 5.8E-8
score: 42.5
coord: 280..319
e-value: 1.4E-8
score: 44.5
coord: 59..98
e-value: 2.9E-6
score: 36.8
coord: 238..277
e-value: 5.8E-4
score: 29.2
coord: 143..182
e-value: 0.0088
score: 25.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 20..56
e-value: 9.9E-7
score: 29.3
coord: 286..319
e-value: 1.3E-5
score: 25.7
coord: 198..230
e-value: 1.5E-6
score: 28.7
coord: 60..98
e-value: 0.0013
score: 19.4
coord: 110..140
e-value: 0.025
score: 15.4
coord: 247..277
e-value: 0.033
score: 15.0
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 198..239
score: 14.819
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 245..280
score: 10.275
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 66..107
score: 11.812
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 287..328
score: 13.449
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 24..65
score: 13.215
NoneNo IPR availableGENE3D2.80.10.50coord: 193..226
e-value: 1.1E-10
score: 41.2
coord: 121..144
e-value: 3.4E-7
score: 29.9
NoneNo IPR availableGENE3D2.40.50.140coord: 145..191
e-value: 5.7E-9
score: 35.0
coord: 9..52
e-value: 5.7E-9
score: 35.0
NoneNo IPR availableGENE3D1.10.10.670coord: 53..95
e-value: 9.9E-16
score: 57.0
coord: 96..120
e-value: 5.0E-7
score: 29.0
coord: 227..275
e-value: 1.1E-13
score: 50.4
coord: 276..362
e-value: 2.6E-13
score: 49.2
NoneNo IPR availableCDDcd00200WD40coord: 21..319
e-value: 7.26721E-66
score: 211.81
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 85..99
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 127..141
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 217..231
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 264..278
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 43..57
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 24..328
score: 50.7
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 18..319

Blast
[Close]
BLAST of TCONS_00060587-protein vs. Swiss-Prot (Human)
Match: WDR88 (WD repeat-containing protein 88 OS=Homo sapiens GN=WDR88 PE=2 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 5.480e-72
Identity = 128/372 (34.41%), Postives = 213/372 (57.26%), Query Frame = 0 
Query:    4 KVAEEEGW-DHEKLAKVKLKVLRGHIGGVQTCCFLDGQSLVLSGGVDKTLKIWDIQDGSC-RETLIGHKAEVTCTRSTKDGRRIVSSGLDKYLIVWDGTTGQPILESRHEGMVMSCDISYDGRYMLSGTDLDNVVVIWDLRQDKSIKMLK-HHNNTVMCVRFAPSSYQFCSSGMDFTSVVCDMQNYRNERDPHAVIRLGGHINMISSCDFSGDERRLCTGSWDKTIKVWDLNSGSYRTSGP-VSLDKVHEGCVSACRFSKDGSTIMSANYDQSLIMWDADNACVNFTLQGHTGWVTDCDFSADELGVISSSKDGTIRYWDILRKDEIPVVLQNKKTIGLRLLKCHECQKQFSITQAQ-NADAIKLCVFCRLE 370
            +V E+  W D + L+K+  K+L GH   V TC F    + +LSG  D T+K+WD  DGS  R+     KA V     T D  R++++  DK +  WD  TG+ + + R++  ++SC  S DG+Y++SG D+D+ + I D     ++ ++K HH  ++    F P S +  S  +D    + D+ +         +     H N IS+C F+     LCT SWDK +K+W++++G +R  G  V+L + HEG VS+C F++D S ++S  +D+++ +WD        +L+GH  WV D   S ++  ++S+SKD T+R W+I   DEIP+V++ KK +GL+L +C  C + FSI ++  +++    CVFCR++
Sbjct:   77 QVPEKLIWGDQDPLSKIPFKILSGHEHAVSTCHFCVDDTKLLSGSYDCTVKLWDPVDGSVVRDFEHRPKAPVVECSITGDSSRVIAASYDKTVRAWDLETGKLLWKVRYDTFIVSCKFSPDGKYVVSGFDVDHGICIMDAENITTVSVIKDHHTRSITSCCFDPDSQRVASVSLDRCIKIWDVTSQAT-----LLTITKAHSNAISNCCFTFSGHFLCTSSWDKNLKIWNVHTGEFRNCGACVTLMQGHEGSVSSCHFARDSSFLISGGFDRTVAIWDVAEGYRKLSLKGHNDWVMDVAISNNKKWILSASKDRTMRLWNIEEIDEIPLVIKYKKAVGLKLKQCERCDRPFSIFKSDTSSEMFTQCVFCRID 443
The following BLAST results are available for this feature:
BLAST of TCONS_00060587-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR885.480e-7234.41WD repeat-containing protein 88 OS=Homo sapiens GN... [more]
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