TCONS_00060627-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060627-protein
Unique NameTCONS_00060627-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060627-protein ID=TCONS_00060627-protein|Name=TCONS_00060627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MDITEYLEENVETRIFQSPIPESCKNSPCCLGIDEAGRGPVLGPMVYGIC
YCPISFMEELKELGFADSKTLKKEDRDKLLSVIEQNIENIGWAIKIISPT
SLSNDMLRSTKISLNEISHNAAIELTKVTIKDGADIKEMYVDTVGPAQKY
QDKLSEIFKSINVTVTPKADSKFPIVSAASICAKVARDQCLEGWKFGEGE
FPTEYGCGYTSDSLTQKWLKDVIDPVFGHPQFVRFGWSTCSEMLKKHARD
VTWEDDDDEGKPKKKKSSFAITSFYTQEKNNQKVDHCRFFKERNLQQVSS
L
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038133XLOC_038133Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060627TCONS_00060627Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004649RNase_H2_suA
IPR023160RNase_HII_hlx-loop-hlx_cap_dom
IPR024567RNase_HII/HIII_dom
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0016070RNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004523RNA-DNA hybrid ribonuclease activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004649Ribonuclease H2, subunit ATIGRFAMTIGR00729TIGR00729coord: 31..243
e-value: 5.3E-50
score: 168.3
IPR023160Ribonuclease HII, helix-loop-helix cap domainGENE3D1.10.10.460coord: 204..244
e-value: 3.0E-15
score: 55.4
IPR024567Ribonuclease HII/HIII domainPFAMPF01351RNase_HIIcoord: 31..240
e-value: 3.4E-52
score: 177.1
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 1..199
e-value: 6.5E-59
score: 198.5
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 29..247
NoneNo IPR availableCDDcd07181RNase_HII_eukaryota_likecoord: 31..248
e-value: 7.2298E-133
score: 378.015

Blast
[Close]
BLAST of TCONS_00060627-protein vs. Swiss-Prot (Human)
Match: RNH2A (Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASEH2A PE=1 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 8.530e-94
Identity = 135/304 (44.41%), Postives = 195/304 (64.14%), Query Frame = 0 
Query:    1 MDITEYLEENVETRIFQSPIPESCKNSPCCLGIDEAGRGPVLGPMVYGICYCPISFMEELKELGFADSKTLKKEDRDKLLSVIEQNIENIGWAIKIISPTSLSNDMLRSTKISLNEISHNAAIELTKVTIKDGADIKEMYVDTVGPAQKYQDKLSEIFKSINVTVTPKADSKFPIVSAASICAKVARDQCLEGWKFGE--GEFPTEYGCGYTSDSLTQKWLKDVIDPVFGHPQFVRFGWSTCSEMLKKHARDVTWEDDDDEGKPKKKKSSFAITSFYTQEKNNQKVDHC-RFFKERNLQQVSSL 301
            MD++E   +N       SP+P  C+  PC LG+DEAGRGPVLGPMVY ICYCP+  + +L+ L  ADSKTL + +R++L + +E + + +GWA+ ++SP  +S  ML   K +LN +SH+ A  L +  +  G ++ +++VDTVG  + YQ +L + F  I VTV  KAD+ +P+VSAASICAKVARDQ ++ W+F E   +  T+YG GY +D  T+ WLK+ ++PVFG PQFVRF W T   +L+K A DV WED   E +   +K    ITS++  E +  +     R+F ER L+  +SL
Sbjct:    1 MDLSELERDNTGRCRLSSPVPAVCRKEPCVLGVDEAGRGPVLGPMVYAICYCPLPRLADLEALKVADSKTLLESERERLFAKME-DTDFVGWALDVLSPNLISTSMLGRVKYNLNSLSHDTATGLIQYALDQGVNVTQVFVDTVGMPETYQARLQQSFPGIEVTVKAKADALYPVVSAASICAKVARDQAVKKWQFVEKLQDLDTDYGSGYPNDPKTKAWLKEHVEPVFGFPQFVRFSWRTAQTILEKEAEDVIWEDSASENQEGLRK----ITSYFLNEGSQARPRSSHRYFLERGLESATSL 299
The following BLAST results are available for this feature:
BLAST of TCONS_00060627-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RNH2A8.530e-9444.41Ribonuclease H2 subunit A OS=Homo sapiens GN=RNASE... [more]
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