LIM domain-binding protein 3 (polypeptide) - C. hemisphaerica

Overview
NameLIM domain-binding protein 3
Unique NameTCONS_00060864-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060864-protein ID=TCONS_00060864-protein|Name=LIM domain-binding protein 3|organism=Clytia hemisphaerica|type=polypeptide|length=538bp
VGQWAEQEKSFRMTAEDSNLVGVSHGSRDVIDDVKRHGSAGLSSSGAPSG
GSRSFKVLQSITNNDEDLPPPPPELMGSNAGSGAPNSYGFDDNGPKAQSG
TFKRLQQLTDAGDGDQARTVFDQQKQDRGQPVYAGQSFTPAPKTGGYSGP
TGPNFRVGRASAPSFKSSGSSYIAPKGPPPPAVNAGEVLNPNSKLYQQGS
PAQQLPQQQTYNKPPQPASWQPSQQQPPSPGYNKPAPQSVASSWQPPQQQ
QSPSRTSSVSSQGSSAGGYQPQSPSKTSPGVFDPAANRSPKPFTPSGGAS
QPSAAPTYKLQSYAPPSGPAAPPQQAYTPAPAAPQQPYTPAPVAPQQPKS
APAQATNGQSDLSCSACDQPLDGPFVSAIGKTWHPDHFCCSSCQMSLQKQ
AFVEENNKLFCEKCYNSYYAPKCAHCNNAIIGNCINALGKSWHPDHFVCT
FCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALN
KNWHSGCFTCNQCNARLEGNSFFVSRGMPYCGQHKGGM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038218XLOC_038218Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060864TCONS_00060864Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 481..534
e-value: 4.3E-18
score: 76.1
coord: 422..473
e-value: 2.6E-16
score: 70.2
coord: 363..414
e-value: 2.3E-17
score: 73.7
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 423..477
e-value: 1.1E-12
score: 47.9
coord: 482..534
e-value: 1.9E-12
score: 47.1
coord: 364..416
e-value: 6.9E-12
score: 45.3
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 482..517
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 481..538
score: 10.712
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 362..420
score: 10.702
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 421..480
score: 13.266
NoneNo IPR availableGENE3D2.10.110.10coord: 480..536
e-value: 1.1E-16
score: 60.1
NoneNo IPR availableGENE3D2.10.110.10coord: 363..422
e-value: 1.3E-18
score: 66.5
NoneNo IPR availableGENE3D2.10.110.10coord: 423..479
e-value: 7.7E-19
score: 67.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..357
NoneNo IPR availableCDDcd09361LIM1_Enigma_likecoord: 364..415
e-value: 2.73513E-22
score: 89.3428
NoneNo IPR availableCDDcd08368LIMcoord: 482..534
e-value: 9.3332E-14
score: 65.4167
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 449..514
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 362..388
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 390..453

Blast
[Close]
BLAST of LIM domain-binding protein 3 vs. Swiss-Prot (Human)
Match: LDB3 (LIM domain-binding protein 3 OS=Homo sapiens GN=LDB3 PE=1 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 4.087e-55
Identity = 113/318 (35.53%), Postives = 157/318 (49.37%), Query Frame = 0 
Query:  269 YQPQSPSKTSPGVFDPAANRSPKPFTPSGG-ASQPSAAPTYK---LQSYAPPSGPAAPPQQA--YTPAPAA-----PQQP------------------------------------YTPA-----PVAPQQPKSAPAQATNGQSDLSCSACDQPLDGPFVSAIGKTWHPDHFCCSSCQMSLQKQAFVEENNKLFCEKCYNSYYAPKCAHCNNAIIGNCINALGKSWHPDHFVCTFCNRGFGTDGYLVDSGKPYCEKCFEDLFSVKCGKCMRAITGGEKYVEALNKNWHSGCFTCNQCNARLEGNSFFVSRGMPYCGQH 534
            YQP   S  SP    P AN SP P+TPS   A  PS AP Y    + +Y P   PA  P  A  Y PAP+      P +P                                    YTPA     P+A    + A     + ++ L C  C+  + GPF+ A+G++WHP+ F C+ C+ SL    FVEE N ++CE+CY  ++AP CA CN  I+G  ++AL ++WH   FVC  C + FG   + ++ G+PYCEK + +LFS KC  C   +  G+K++EAL   WH  CF C  C+  LEG  F+  +  P C +H
Sbjct:  408 YQPVPASTYSPS---PGANYSPTPYTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAPNYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVPPLARGTVQRAERFPASSRTPL-CGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFAPLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKKH 721
The following BLAST results are available for this feature:
BLAST of LIM domain-binding protein 3 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LDB34.087e-5535.53LIM domain-binding protein 3 OS=Homo sapiens GN=LD... [more]
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