TCONS_00061203-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061203-protein
Unique NameTCONS_00061203-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length319

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061203-protein ID=TCONS_00061203-protein|Name=TCONS_00061203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MTLTMEWFKTLKPAHKTLIVTGAGISVALLSYSIYRHKNSRKVDEDDVRD
EGSTSPVPVREASSWLKDNIGCDTPEDVGVRSMHVIETPKDEVNPEGWVT
PTPSNGNLVCREVQNTESESFEGTPRELSPRQPVESESTMDEDVEVDRKA
SRKILILGLEQAGKSALLSQLSKEGTDCSNYLPTKGFNVVCISFDTIDLN
IWEVGGALEYRSYWKNFSQSTDLILFAVDASDRTKFPAAKLYFNDIIGEA
NENSDFHIIATKSDLEGAAKADEIQHALGLDGMKIHVVEVAVRTGGASQN
IGLEEVQKRCLNEEDDVHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038386XLOC_038386Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061203TCONS_00061203Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006689Small_GTPase_ARF/SAR
IPR024156Small_GTPase_ARF
IPR004223VitB12-dep_Met_synth_activ_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0008705methionine synthase activity
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO:0009086methionine biosynthetic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009086 methionine biosynthetic process
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0005525 GTP binding
molecular_function GO:0008705 methionine synthase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006689Small GTPase superfamily, ARF/SAR typePRINTSPR00328SAR1GTPBPcoord: 254..275
score: 32.09
coord: 210..235
score: 30.77
coord: 153..176
score: 50.74
IPR006689Small GTPase superfamily, ARF/SAR typePFAMPF00025Arfcoord: 149..306
e-value: 3.2E-31
score: 108.0
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 136..314
e-value: 2.7E-11
score: 53.5
NoneNo IPR availableGENE3D3.40.50.300coord: 135..315
e-value: 9.8E-30
score: 102.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..144
IPR024156Small GTPase superfamily, ARF typePROSITEPS51417ARFcoord: 145..317
score: 11.065
IPR004223Vitamin B12-dependent methionine synthase, activation domainPROSITEPS50974ADOMET_ACTIVATIONcoord: 1..75
score: 9.19
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 147..306

Blast
[Close]
BLAST of TCONS_00061203-protein vs. Swiss-Prot (Human)
Match: ARL3 (ADP-ribosylation factor-like protein 3 OS=Homo sapiens GN=ARL3 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.106e-23
Identity = 50/139 (35.97%), Postives = 80/139 (57.55%), Query Frame = 0 
Query:  153 KILILGLEQAGKSALLSQLSKEGTDCSNYLPTKGFNVVCISFDTIDLNIWEVGGALEYRSYWKNFSQSTDLILFAVDASDRTKF-PAAKLYFNDIIGEANENSDFHIIATKSDLEGAAKADEIQHALGLDGMKIHVVEV 290
            +IL+LGL+ AGK+ LL QL+ E  D S+  PT+GFN+  +      LN+W++GG  + R YWKN+ ++TD++++ +D++DR +F    +     +  E        I A K DL  AA A EI   L L  ++  V ++
Sbjct:   19 RILLLGLDNAGKTTLLKQLASE--DISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI 155
The following BLAST results are available for this feature:
BLAST of TCONS_00061203-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARL35.106e-2335.97ADP-ribosylation factor-like protein 3 OS=Homo sap... [more]
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