TCONS_00061418-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061418-protein
Unique NameTCONS_00061418-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length898

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061418-protein ID=TCONS_00061418-protein|Name=TCONS_00061418-protein|organism=Clytia hemisphaerica|type=polypeptide|length=898bp
MEALNWQPDQQGLEQILQLLKESQSPDTETQRAVQEKLESLNQFPDFNNY
LIFVLTKLKTDGIDEPTRSLAGLILKNNVKSNYTKFPAECRQFVKAECLY
AIGDPSPLIRATIGILITTIAQKEFGTWPELLPMLMRMLDSEDYNVCEGA
FGALQKICEDLSRQLEGENHTQILNVMIPKFLQFFKHQSPKLRSHALACV
NQFIICRSQVLMNNIDKFMEGLFALSNDDDAEVRKNVCRAIVMLVEVRVE
QLIPNMNNLVEYMLIRTQDSEDSVALEACEFWLALAEQPICKQVLQPFLP
RLVPILVNGMKYSGMDIMLLKGDVEEDETIPDNEQDIRPRFHKSKIHNLD
QRENSKDEDDDGEDSDSDIDGDMNDDFLTDWNLRKCSAAALDVLATVFRD
DLLPFLLPILKEILFHPDWVTKESGILVLGAIAEGCVNGINPHLPELVPF
LITSLNDKKALVRSITCWTLSRYSHWIVSQPHELYLQKLMTELLKRVLDK
NKRVQEAACSAFATLEEEACTELVPYLGFILETLVFAFNKYQHKNLLILY
DAIGTLADSVGPHLNKPEYINMLMPPLISKWNALKDEDKDLFPLLECLSS
VATALQSGFLPYAEPVYYRCVSLVEQTLAQCYAAQMNPGQFEMPDKDFMV
VALDLLSGLAEGLEGQIEQFVKDSNIMALLFQCMQDPGLEVKQSSFALLG
DLTKACFQHVKPATRDIIPILGQNLNPEFISVCNNATWAIGELAIMLGAE
MNEFLSVVLQQLISIINRPKTPKTLLENTAITIGRLGLVCPSDISPHLAQ
FIRPWCTSLRNIRDNDEKDSAFRGICALIGLNPGGVVQDFIFFCDAVASW
NSPAADLKEMFNSILFGFKNQVGDENWQRFSDQFPPPLKERLKTHYGI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038531XLOC_038531Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061418TCONS_00061418Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001494Importin-beta_N
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0008536Ran GTPase binding
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
molecular_function GO:0005488 binding
molecular_function GO:0008536 Ran GTPase binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001494Importin-beta, N-terminal domainSMARTSM00913IBN_N_2coord: 34..104
e-value: 6.6E-7
score: 38.9
IPR001494Importin-beta, N-terminal domainPFAMPF03810IBN_Ncoord: 35..103
e-value: 2.2E-12
score: 46.6
IPR001494Importin-beta, N-terminal domainPROSITEPS50166IMPORTIN_B_NTcoord: 34..104
score: 9.441
NoneNo IPR availablePFAMPF13513HEAT_EZcoord: 421..472
e-value: 1.2E-10
score: 41.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..371
NoneNo IPR availableCDDcd00020ARMcoord: 129..246
e-value: 1.52755E-7
score: 49.6203
NoneNo IPR availableCDDcd00020ARMcoord: 406..517
e-value: 6.45925E-7
score: 47.3091
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..898
e-value: 1.6E-199
score: 664.5
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 1..888

Blast
[Close]
BLAST of TCONS_00061418-protein vs. Swiss-Prot (Human)
Match: TNPO1 (Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2)

HSP 1 Score: 1317.37 bits (3408), Expect = 0.000e+0
Identity = 651/894 (72.82%), Postives = 757/894 (84.68%), Query Frame = 0 
Query:    6 WQPDQQGLEQILQLLKESQSPDTETQRAVQEKLESLNQFPDFNNYLIFVLTKLKTDGIDEPTRSLAGLILKNNVKSNYTKFPAECRQFVKAECLYAIGDPSPLIRATIGILITTIAQK-EFGTWPELLPMLMRMLDSEDYNVCEGAFGALQKICEDLSRQLEGENHTQILNVMIPKFLQFFKHQSPKLRSHALACVNQFIICRSQVLMNNIDKFMEGLFALSNDDDAEVRKNVCRAIVMLVEVRVEQLIPNMNNLVEYMLIRTQDSEDSVALEACEFWLALAEQPICKQVLQPFLPRLVPILVNGMKYSGMDIMLLKGDVEEDETIPDNEQDIRPRFHKSKIHNLDQRENSKDEDDDGEDSDSDIDGDMNDDFLTDWNLRKCSAAALDVLATVFRDDLLPFLLPILKEILFHPDWVTKESGILVLGAIAEGCVNGINPHLPELVPFLITSLNDKKALVRSITCWTLSRYSHWIVSQPHELYLQKLMTELLKRVLDKNKRVQEAACSAFATLEEEACTELVPYLGFILETLVFAFNKYQHKNLLILYDAIGTLADSVGPHLNKPEYINMLMPPLISKWNALKDEDKDLFPLLECLSSVATALQSGFLPYAEPVYYRCVSLVEQTLAQCYAAQMNPGQFEMPDKDFMVVALDLLSGLAEGLEGQIEQFVKDSNIMALLFQCMQDPGLEVKQSSFALLGDLTKACFQHVKPATRDIIPILGQNLNPEFISVCNNATWAIGELAIMLGAEMNEFLSVVLQQLISIINRPKTPKTLLENTAITIGRLGLVCPSDISPHLAQFIRPWCTSLRNIRDNDEKDSAFRGICALIGLNPGGVVQDFIFFCDAVASWNSPAADLKEMFNSILFGFKNQVGDENWQRFSDQFPPPLKERLKTHYGI 898
            W+PD+QGL+QILQLLKESQSPDT  QR VQ+KLE LNQ+PDFNNYLIFVLTKLK++  DEPTRSL+GLILKNNVK+++  FP     F+K+ECL  IGD SPLIRAT+GILITTIA K E   WP+LLP L  +LDSEDYN CEGAFGALQKICED +  L+ +   + LN+MIPKFLQFFKH SPK+RSHA+ACVNQFII R+Q LM +ID F+E LFAL+ D++ EVRKNVCRA+VML+EVR+++L+P+M+N+VEYML RTQD +++VALEACEFWL LAEQPICK VL   LP+L+P+LVNGMKYS +DI+LLKGDVEEDETIPD+EQDIRPRFH+S+   + Q+ +    +++ +D D   D D     ++DWNLRKCSAAALDVLA V+RD+LLP +LP+LKE+LFH +WV KESGILVLGAIAEGC+ G+ P+LPEL+P LI  L+DKKALVRSITCWTLSRY+HW+VSQP + YL+ LMTELLKR+LD NKRVQEAACSAFATLEEEACTELVPYL +IL+TLVFAF+KYQHKNLLILYDAIGTLADSVG HLNKPEYI MLMPPLI KWN LKDEDKDLFPLLECLSSVATALQSGFLPY EPVY RCV+LV++TLAQ       P Q+E PDKDFM+VALDLLSGLAEGL G IEQ V  SNI+ L++QCMQD   EV+QSSFALLGDLTKACFQHVKP   D +PILG NLNPEFISVCNNATWAIGE++I +G EM  ++ +VL QL+ IINRP TPKTLLENTAITIGRLG VCP +++P L QFIRPWCTSLRNIRDN+EKDSAFRGIC +I +NP GV+QDFIFFCDAVASW +P  DL++MF  IL GFKNQVGDENW+RFSDQFP PLKERL   YG+
Sbjct:   13 WKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE--DEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSR--TVAQQHDEDGIEEEDDDDDEIDDDDT----ISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV 898
The following BLAST results are available for this feature:
BLAST of TCONS_00061418-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TNPO10.000e+072.82Transportin-1 OS=Homo sapiens GN=TNPO1 PE=1 SV=2[more]
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