TCONS_00061421-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061421-protein
Unique NameTCONS_00061421-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061421-protein ID=TCONS_00061421-protein|Name=TCONS_00061421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=394bp
MADARDLYKGKTSDQIREELDEFIENVKEKNKDYKYDGGLTSENVDEELL
LNPAFMNEAPTQEQIDRSPALQALQKIKYDEENPEACALSHKEDGNYHFQ
RKEYRKAITAYTEGLKQKHDDEPLKAVLLTNRAAANFHLGNNRTALNDAI
AALKYKPGHMKAIIRGAIACFDMEKYEECVTWCERGLKVDAKEQKLINYK
KKAIHQKKQKERDERKQNMKQFNDLQRRKKMMDAMKERAVTFYSKDREEE
LDSNEHEATLEHLLFKRSPRSGAITLDENNEFHWPLYLLYPEYNQSDFVE
DCHEDIRLSDQLNVVFSETPEWDVEKSYTPPNVEVFFEDTKRRQLIRVDP
NVSLKTIIADKRYRINGECPTLMILSKNSDFYTKTFENQKFEDF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038533XLOC_038533Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061421TCONS_00061421Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 208..228
NoneNo IPR availableCOILSCoilCoilcoord: 13..33
NoneNo IPR availableGENE3D1.10.150.160coord: 79..137
e-value: 6.2E-12
score: 44.9
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 160..193
e-value: 37.0
score: 10.0
coord: 126..159
e-value: 3.0
score: 16.8
coord: 88..121
e-value: 0.095
score: 21.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 165..216
e-value: 1.0E-4
score: 21.8
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 138..164
e-value: 0.0016
score: 17.8
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 89..203
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 88..193
score: 11.181

Blast
[Close]
BLAST of TCONS_00061421-protein vs. Swiss-Prot (Human)
Match: TTC4 (Tetratricopeptide repeat protein 4 OS=Homo sapiens GN=TTC4 PE=1 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.106e-89
Identity = 145/363 (39.94%), Postives = 219/363 (60.33%), Query Frame = 0 
Query:   21 DEFIENVKEKNKDYKYDGGLTSENVDEELLLNPAFMNEAPTQEQIDRSPALQALQKIKYDEE-NPEACALSHKEDGNYHFQRKEYRKAITAYTEGLKQKHDDEPLKAVLLTNRAAANFHLGNNRTALNDAIAALKYKPGHMKAIIRGAIACFDMEKYEECVTWCERGLKVDAKEQKLINYKKKAIHQKKQKERDERKQNMKQFNDLQRRKKMMDAMKERAVTFYSKDREEELDSNEHEATL-EHLLFKRSPRSGAITLDENNEFHWPLYLLYPEYNQSDFVEDCHEDIRLSDQLNVVFSETPEWDVEKSYTPPNVEVFFEDTKRRQLIRVDPNVSLKTIIADKRYRINGECPTLMILSKNSDF 381
            D+ +++  EK +   Y GG   +  ++E    P FM+ AP++     +P L  LQ I +DEE +PE  A ++K++GN +F+ K+Y+KA+ +YTEGLK+K  D  L AVL TNRAAA ++LGN R+ALND  AA K KP H+KAIIRGA+   +++ + E V WC+ GL++DAKE+KL+  + KA   K+ ++RD RK N+K+  +  + + ++ A+K R +       E+E  ++E    L    L   +P    ++LD      WP+  LYPEY QSDF+   HED R  D L V+F ETP WD+E+ Y P N+EV+FED  R +L RV    +L  ++  +RY +    P  ++   +S F
Sbjct:   11 DDVMDSFLEKFQSQPYRGGFHEDQWEKEFEKVPLFMSRAPSEIDPRENPDLACLQSIIFDEERSPEEQAKTYKDEGNDYFKEKDYKKAVISYTEGLKKKCADPDLNAVLYTNRAAAQYYLGNFRSALNDVTAARKLKPCHLKAIIRGALCHLELKHFAEAVNWCDEGLQIDAKEKKLLEMRAKADKLKRIEQRDVRKANLKEKKERNQNEALLQAIKARNIRLSEAACEDEDSASEGLGELFLDGLSTENPHGARLSLDGQGRLSWPVLFLYPEYAQSDFISAFHEDSRFIDHLMVMFGETPSWDLEQKYCPDNLEVYFEDEDRAELYRVPAKSTLLQVLQHQRYFVKALTPAFLVCVGSSPF 373
The following BLAST results are available for this feature:
BLAST of TCONS_00061421-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTC41.106e-8939.94Tetratricopeptide repeat protein 4 OS=Homo sapiens... [more]
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