TCONS_00061443-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061443-protein
Unique NameTCONS_00061443-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length362

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061443-protein ID=TCONS_00061443-protein|Name=TCONS_00061443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=362bp
KDEPNETEILSPETINEGDKTEAACEEEDEPRLSPQEEMDQLLNNCFCQA
VINSKKAELPMLVTKFASQYLHPACPEGQRIDVKKSSYKKMSKFLSEMVS
RGIIEMKEFQKGVESITKINQENETLREFKQSDFAKLAKEMKELHLQEKK
DEETKNKQGVEIRELFSVSGKTIPFFKEIGISKGCVLASPDIRKLLMEYV
KKKELIDPNNKKFVRLDPLLTDVLFKKGEHQEKLTWDKLMSHMVENMNPC
CEIAIPGEKPIIRKGKMECIEVTTEKRMGNKKVTLVKNLDQYGIDLKDFA
QELQQMAASSTALHEIPVGKNDRFAVQVQGVQTKHVKTLLDRRNIPKKYI
KGLDNIDGKKKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038544XLOC_038544Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061443TCONS_00061443Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003121SWIB_MDM2_domain
IPR001950SUI1
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0003743translation initiation factor activity
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
molecular_function GO:0005515 protein binding
molecular_function GO:0003743 translation initiation factor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 188..224
e-value: 4.8E-6
score: 26.3
IPR003121SWIB/MDM2 domainGENE3D1.10.245.10coord: 74..253
e-value: 6.6E-13
score: 48.1
IPR003121SWIB/MDM2 domainSUPERFAMILY47592SWIB/MDM2 domaincoord: 158..251
IPR001950SUI1 domainPFAMPF01253SUI1coord: 268..346
e-value: 1.6E-17
score: 63.6
IPR001950SUI1 domainGENE3D3.30.780.10coord: 266..362
e-value: 5.0E-17
score: 61.5
IPR001950SUI1 domainPROSITEPS50296SUI1coord: 270..344
score: 15.263
IPR001950SUI1 domainSUPERFAMILY55159eIF1-likecoord: 240..352
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableCDDcd11608eIF2D_Ccoord: 269..353
e-value: 8.36567E-27
score: 100.715

Blast
[Close]
BLAST of TCONS_00061443-protein vs. Swiss-Prot (Human)
Match: EIF2D (Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 1.762e-61
Identity = 126/332 (37.95%), Postives = 200/332 (60.24%), Query Frame = 0 
Query:   36 QEEMDQLLNNCFCQAV-INSKKAELPMLVTKFASQYLHPACPEGQRIDVKKSSYKKMSKFLSEMVSRGIIEMKEFQKGVESITKINQENETLREFKQSDFAKLAKEMKELHLQEKKDEETKNKQGVEIRELFSVSGKTIPFFKEIGISKGCVLASPDIRKLLMEYVKKKELIDPNNKKFVRLDPLLTDVLFKKGEHQE--KLTWDKLMSHMVENMNPCCEIAIPGEKPIIRKGKMECIEVTTEKRMGNKKVTLVKNLDQYGIDLKDFAQELQQMAASSTALHEIPVGKNDRFAVQVQGVQTKHVKT-LLDRRNIPKKYIKGLDNI--DGKKK 361
            QE+MD+LL  CF  A+    KKA+LP+L + F   ++   CPEG+++D+KKSSYKK+SKFL +M    II++KE  KGVESI  ++ ++  +  F   + +  ++      +QE   E+  +    +I+ L+ V       F+E G  KG  L   ++R +++ Y KK +L+D +NK  VRLDP+L D + +K E     KL WD L++  +E + P  ++ +PG++PI++KG++  I++T  +R  NKKVT+V+NL+ YG+D    A  LQQ   +ST ++  P G  D   VQ+QG Q  H+   LL+   +P+K+I+GL+     GKKK
Sbjct:  261 QEQMDELLQQCFLHALKCRVKKADLPLLTSTFLGSHMFSCCPEGRQLDIKKSSYKKLSKFLQQMQQEQIIQVKELSKGVESIVAVDWKHPRITSFVIPEPSPTSQT-----IQEGSREQPYHPP--DIKPLYCVPASMTLLFQESGHKKGSFLEGSEVRTIVINYAKKNDLVDADNKNLVRLDPILCDCILEKNEQHTVMKLPWDSLLTRCLEKLQPAYQVTLPGQEPIVKKGRICPIDITLAQRASNKKVTVVRNLEAYGLDPYSVAAILQQRCQASTTVNPAP-GAKDSLQVQIQGNQVHHLGWLLLEEYQLPRKHIQGLEKALKPGKKK 584
The following BLAST results are available for this feature:
BLAST of TCONS_00061443-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF2D1.762e-6137.95Eukaryotic translation initiation factor 2D OS=Hom... [more]
back to top