TCONS_00061560-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061560-protein
Unique NameTCONS_00061560-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061560-protein ID=TCONS_00061560-protein|Name=TCONS_00061560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
MAPIRSMVKKQKQNKDKTDISRKEGSVEKETTSTKWKNKERVLVFCQRGI
NFRARHLMLDLRTLMPHSRPDNKLDRKDKLTVINEVCEMKNCNRCVFFEM
KKKKDLFMWVSSVPHGPSARFLVENVHTMDELKLAGNCLKGSRPILSFDK
SFDKSVHYQLLKEMFTQIYATPNKHPKSKPFIDRIMTFSVNDNRIWIRNF
QIVNHEDMSLTEIGPRFVLNLIRIFDGSFGGPTIFENPKYTSPNEHRRNL
RKAASFRYVTKRSAKDEFNKRVTEREEHIEESLDDIFHTVTQADINKIKS
QSG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038625XLOC_038625Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061560TCONS_00061560Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007109Brix
IPR004154Anticodon-bd
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007109Brix domainSMARTSM00879Brix_2coord: 43..224
e-value: 1.1E-51
score: 187.8
IPR007109Brix domainPFAMPF04427Brixcoord: 48..223
e-value: 1.2E-38
score: 133.0
IPR007109Brix domainPROSITEPS50833BRIXcoord: 40..230
score: 32.075
NoneNo IPR availableGENE3D3.40.50.10480coord: 39..221
e-value: 4.2E-53
score: 179.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33
IPR004154Anticodon-bindingSUPERFAMILY52954Class II aaRS ABD-relatedcoord: 41..227

Blast
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BLAST of TCONS_00061560-protein vs. Swiss-Prot (Human)
Match: BRX1 (Ribosome biogenesis protein BRX1 homolog OS=Homo sapiens GN=BRIX1 PE=1 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 1.865e-122
Identity = 155/232 (66.81%), Postives = 191/232 (82.33%), Query Frame = 0 
Query:   35 KWKNKERVLVFCQRGINFRARHLMLDLRTLMPHSRPDNKLDRKDKLTVINEVCEMKNCNRCVFFEMKKKKDLFMWVSSVPHGPSARFLVENVHTMDELKLAGNCLKGSRPILSFDKSFDKSVHYQLLKEMFTQIYATPNKHPKSKPFIDRIMTFSVNDNRIWIRNFQIVNHEDMSLTEIGPRFVLNLIRIFDGSFGGPTIFENPKYTSPNEHRRNLRKAASFRYVTKRSAKD 266
            KWKNKER+L+F  RGINFR RHLM DLR LMPHS+ D K+DRKDKL VINEVCEMKNCN+C++FE KKK+DL+MW+S+ PHGPSA+FLV+N+HT+ ELK+ GNCLKGSRP+LSFD +FD+  HY LLKE+  QI++TP  HPKS+PF+D + TF++ DNRIW RNFQI+  ED +L EIGPRFVLNLI+IF GSFGGPT++ENP Y SPN HRR +R   + +Y  K+  KD
Sbjct:   55 KWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTPRYHPKSQPFVDHVFTFTILDNRIWFRNFQIIE-EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQSPNMHRRVIRSITAAKYREKQQVKD 285
The following BLAST results are available for this feature:
BLAST of TCONS_00061560-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRX11.865e-12266.81Ribosome biogenesis protein BRX1 homolog OS=Homo s... [more]
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