TCONS_00061563-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061563-protein
Unique NameTCONS_00061563-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061563-protein ID=TCONS_00061563-protein|Name=TCONS_00061563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MDEELQTRFVNEPSNSLFCPICRKLFQDPSISIACGHTFCRSCVDSRLRS
RSYMTCPLDNAQIETNSLVPNKAVQGQVEDLLIYCRYGLIPNPPEEGSEW
EIDNTGCTEHIRLGQRYEHEEVCGKAWVDCPNSKECERMRKEELDTHLKN
CPKHICPNQKKGCSFKGFQDAVQQHLHNCQFNESAVEWDVLTSLDDENAM
DGFQAKSLVKAVKNLNERVSALEKGKDDIMFLVQKCNENVINLSVQVEKL
AYSMEHIRQAQHAMMREKQLESQSASDLRSPNQAYRRTSSTTTLNNFNMP
RMRYSIQGPSXLICEQVGKSAL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038628XLOC_038628Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061563TCONS_00061563Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR027370Znf-RING_LisH
IPR017907Znf_RING_CS
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 205..225
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 10..85
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 19..59
e-value: 2.8E-5
score: 33.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 19..60
score: 12.253
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 19..58
e-value: 7.54787E-8
score: 47.0552
IPR003613U box domainSMARTSM00504Ubox_2coord: 16..81
e-value: 0.0093
score: 14.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 149..242
e-value: 2.4E-4
score: 20.7
coord: 80..148
e-value: 6.2E-10
score: 38.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 10..79
e-value: 4.1E-16
score: 58.1
IPR027370RING-type zinc-finger, LisH dimerisation motifPFAMPF13445zf-RING_UBOXcoord: 19..57
e-value: 3.8E-11
score: 42.7
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 35..44
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 119..179
score: 8.762
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 138..186
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 81..137

Blast
[Close]
BLAST of TCONS_00061563-protein vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.865e-31
Identity = 67/173 (38.73%), Postives = 94/173 (54.34%), Query Frame = 0 
Query:    9 FVNEPSNSLFCPICRKLFQDPSISIACGHTFCRSCVDSRLRSRSYMTCPLDNAQIETNSLVPNKAVQGQVEDLLIYCRYGLIPNPPEEGSEWEIDNTGCTEHIRLGQRYEHEEVCGKAWVDCPNSKECERMRKEELDTHLKNCPKHICPNQKKGCSFKGFQDAVQQHLHNCQF 181
            F  +PS  L C +C  +F+DP I+  CGHTFCR C    L+S     CP+DN ++    +V N AV  Q+ +L I+CR+G       +   +E+D  GC   I+L  R +HE  C    V CPN+  C  + +  L+ HLK C    CP+ K GC+F G QD  + HL  C+F
Sbjct:  121 FAEQPSVKLCCQLCCSVFKDPVIT-TCGHTFCRRCA---LKSEK---CPVDNVKLTV--VVNNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVDPRGCPFTIKLSARKDHEGSCDYRPVRCPNNPSCPPLLRMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLETCRF 284
The following BLAST results are available for this feature:
BLAST of TCONS_00061563-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF79.865e-3138.73E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
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