TCONS_00061564-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061564-protein
Unique NameTCONS_00061564-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061564-protein ID=TCONS_00061564-protein|Name=TCONS_00061564-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
HTGVIRAMTARWPYVFSGAADHSIKVWDIRDKDMKNSKGCIATFAGHSGD
IHALCFANGYVFSASTDKSLKVWSVETFQLHNSVEDAHSDIIGALASTGR
YIFSGSYSSIKIWRASDLKLMHTISDTGHWIRAFAVGPNRDKVYSGSHNA
VNVWETEEPFRSAGTLTHSHGSVYSLAATKEYLILGTYNQNSHLYDINTL
EYVKVLTGHLGIINSLLPSPSGRFLFTGSHDHTVQLWDMMKLLPIQVLSR
HEGSVNCMALSGDMIFTGSEDKEIKVYMYYQGLASKNLMVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038629XLOC_038629Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061564TCONS_00061564Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 15..29
score: 33.79
coord: 61..75
score: 31.27
coord: 225..239
score: 34.93
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 37..74
e-value: 1.9E-6
score: 37.4
coord: 241..278
e-value: 2.4E-4
score: 30.4
coord: 117..155
e-value: 1.1
score: 16.6
coord: 77..114
e-value: 7.9
score: 11.3
coord: 199..238
e-value: 2.0E-8
score: 44.0
coord: 159..196
e-value: 340.0
score: 1.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 244..277
e-value: 0.044
score: 14.6
coord: 202..238
e-value: 4.9E-8
score: 33.4
coord: 40..74
e-value: 4.6E-4
score: 20.8
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 206..239
score: 13.984
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 44..83
score: 11.21
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..37
score: 9.94
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 248..277
score: 8.604
NoneNo IPR availableGENE3D2.80.10.50coord: 231..288
e-value: 3.3E-15
score: 55.5
NoneNo IPR availableGENE3D1.10.10.670coord: 72..105
e-value: 1.5E-7
score: 30.7
NoneNo IPR availableCDDcd00200WD40coord: 1..277
e-value: 1.15461E-47
score: 161.734
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 1..71
e-value: 2.3E-15
score: 56.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 106..230
e-value: 1.6E-27
score: 96.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 15..29
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 225..239
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..287
score: 35.462
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 9..277

Blast
[Close]
BLAST of TCONS_00061564-protein vs. Swiss-Prot (Human)
Match: TRAF7 (E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens GN=TRAF7 PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.188e-47
Identity = 90/267 (33.71%), Postives = 151/267 (56.55%), Query Frame = 0 
Query:   15 VFSGAADHSIKVWDIRDKDMKNSKGCIATFAGHSGDIHALCFANGYVFSASTDKSLKVWSVETFQLHNSVEDAHSDIIGALASTGRYIFSGSYSSIKIWR--ASDLKLMHTISDTGHWIRAFAVGPNRDKVYSGSHNAVNVWETEEPFRSAGTLTHSHGSVYSLAATKEYLILGTYNQNSHLYDINTLEYVKVLTGHLGIINSL--LPSPSGRFLFTGSHDHTVQLWDMMKLLPIQVLSRHEGSVNCMALSGDMIFTGSEDKEIKVY 277
            +FSG++D +IKVWD        +  C  T  GH G + ALC     ++S S D ++ VW ++  Q  N++  AH + +  L S+   +FSGS  +IK+W    ++LKL   ++   HW+RA      +  +YSGS+  + +W+          L  S GSVYS+A T  +++ GTY    H++DI + E V+ LTGH+G + +L  + +P    +F+ S+D ++++W M  ++  Q L RH+GSV  +A+S   +F+G+ D  +KV+
Sbjct:  411 LFSGSSDKTIKVWD-----TCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIR-AHDNPVCTLVSSHNVLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAA--QSYLYSGSYQTIKIWDIRT-LDCIHVLQTSGGSVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSMDNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVW 668
The following BLAST results are available for this feature:
BLAST of TCONS_00061564-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF72.188e-4733.71E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens ... [more]
back to top