TCONS_00061628-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061628-protein
Unique Name	TCONS_00061628-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1153

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061628-protein ID=TCONS_00061628-protein|Name=TCONS_00061628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1153bp
MSSQSSGPSEAPATLASTDAEHPETFVAQLDELKKSQEEQYILLSKKYKE
NKDKLKFQQQQELKEYYQRQSVLGSSNKVPSRHDYPPTQIPPPYYHGEPI
PRKGDYSSITKGASMFDDLPTQAGGGGSGGGLNALVKERLRKKAIDNINK
KTHFEHVDHKDPSMPPPRRIPDDYNRWVYERYEGSGGGGGGGPPEDDDEP
GSFSLRKAESEPNLRGRNQLKLRTNRYKPHTDHHPLNPRHYSPNDTSSST
ASASRHREAVSPPYRPPLEKVFHPGPRGVPLFQSPSLPNIYKTSRSQVHF
PSSSSSMMGSSGSSSSEMKAPFDPGHPKYLEMLKLQYATNHRYLQHTMVE
YGYDPKEIDTFHQKYLAEIDDSSMSDVERVKQLLESQNKLYLHLAERLSS
PYSKSYSKGLNSIDSAPSLMSSRSHDSLHNIKLPRNDPYLVHPRGGPSSG
SRFPMHSRDFPPSLPPDLHSKDHALTRRRLKEHLREKQDASSIKTSMDYH
QHEDKIQEETAEDVANEERKRASRDEDAYHHRSSELHAATKAESTNNTSV
FDSSRSNGLSSRFNGSDTKLYSSSSSLHTSNPRLMGSEPRLYSSTEARER
ETRERESRERERDRLHGSNPHLHGSNPHLHSSSSRLSGSNPNIHGPSSRH
NGSNSYLYGSNPRLYSSASRLHSSNSSLHRSDSGSKMNSSDPRISTGSDP
RLSGHFIEPNKSTKHMTGLVYDTIMLKHQCQCGGNFPLHPECAGRLQSIW
ARLQETGVANLCEKIRPRKATISELQTVHSEQHTLLFGGGASSRGSSNLR
CFTKLPCGGTGVDDDTIWNETHTANAARMAAGCVIELAFKVASGDLKNGF
AIVRPPGHHAETHQAKGFCYFNSVAIAAKLLCMKMAVERVMILDWDIHHG
NGTQQMFYDDDRVLYVSMHRHDEGSFFPGTGKAEECGAGIGAGTNINIPF
NGGLDPMYGDKEYLAAFRSIVLPVAKEYKPDIILVSAGFAAADGHSPHLG
GYNVTAACFAYMTKQLMELRNGKLVLALEGGYDLQSLCDSSEQCIRALLG
GATLELTEEALMTKPHDNAVKCLEKAVQIQGKYWPGVKRAASLVNSSQNS
AKRLEKEENETVNALASLSVRVVQQNGKGAETSEKKEESPASRQEEPMAM
DEN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038655	XLOC_038655	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061628	TCONS_00061628	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000286	His_deacetylse
IPR023801	His_deacetylse_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1087..1107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1123..1153
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..319
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..269
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 417..710
None	No IPR available	SUPERFAMILY	52768	Arginase/deacetylase	coord: 716..1087
IPR000286	Histone deacetylase superfamily	PRINTS	PR01270	HDASUPER	coord: 855..878 score: 47.84 coord: 980..990 score: 36.36 coord: 889..904 score: 60.22
IPR023801	Histone deacetylase domain	PFAM	PF00850	Hist_deacetyl	coord: 739..1047 e-value: 1.6E-80 score: 270.8
IPR023801	Histone deacetylase domain	GENE3D	3.40.800.20		coord: 709..1113 e-value: 5.2E-138 score: 459.6

Blast

[Close]

BLAST of TCONS_00061628-protein vs. Swiss-Prot (Human)
Match: HDAC4 (Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=1 SV=3)

HSP 1 Score: 536.184 bits (1380), Expect = 3.929e-172
Identity = 244/423 (57.68%), Postives = 310/423 (73.29%), Query Frame = 0

Query:  708 EPNKSTKHMTGLVYDTIMLKHQCQCGGNFPLHPECAGRLQSIWARLQETGVANLCEKIRPRKATISELQTVHSEQHTLLFGGGASSRGSSNLR--------CFTKLPCGGTGVDDDTIWNETHTANAARMAAGCVIELAFKVASGDLKNGFAIVRPPGHHAETHQAKGFCYFNSVAIAAKLLCMKMAVERVMILDWDIHHGNGTQQMFYDDDRVLYVSMHRHDEGSFFPGTGKAEECGAGIGAGTNINIPFNGGLDPMYGDKEYLAAFRSIVLPVAKEYKPDIILVSAGFAAADGHSPHLGGYNVTAACFAYMTKQLMELRNGKLVLALEGGYDLQSLCDSSEQCIRALLGGATLELTEEALMTKPHDNAVKCLEKAVQIQGKYWPGVKRAASLVNSSQNSAKRLEKEENETVNALASLSVRV 1122
            EP    +  TGLVYDT+MLKHQC CG +   HPE AGR+QSIW+RLQETG+   CE IR RKAT+ ELQTVHSE HTLL+G    +R   + +         F +LPCGG GVD DTIWNE H+A AAR+A GCV+EL FKVA+G+LKNGFA+VRPPGHHAE     GFCYFNSVA+AAKLL  +++V +++I+DWD+HHGNGTQQ FY D  VLY+S+HR+D+G+FFPG+G  +E G G G G N+N+ F GGLDP  GD EYLAAFR++V+P+A E+ PD++LVS+GF A +GH   LGGYN++A CF Y+TKQLM L  G++VLALEGG+DL ++CD+SE C+ ALLG     L E+ L  +P+ NAV+ +EK ++I  KYW  ++R  S    S   A+  E EE ETV A+ASLSV V
Sbjct:  645 EPPTKPRFTTGLVYDTLMLKHQCTCGSSSS-HPEHAGRIQSIWSRLQETGLRGKCECIRGRKATLEELQTVHSEAHTLLYGTNPLNRQKLDSKKLLGSLASVFVRLPCGGVGVDSDTIWNEVHSAGAARLAVGCVVELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLSVSKILIVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLDPPMGDAEYLAAFRTVVMPIASEFAPDVVLVSSGFDAVEGHPTPLGGYNLSARCFGYLTKQLMGLAGGRIVLALEGGHDLTAICDASEACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTAGRSLIEAQTCENEEAETVTAMASLSVGV 1066

The following BLAST results are available for this feature:

BLAST of TCONS_00061628-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061628-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HDAC4	3.929e-172	57.68	Histone deacetylase 4 OS=Homo sapiens GN=HDAC4 PE=...	[more]

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TCONS_00061628-protein (polypeptide) - C. hemisphaerica