TCONS_00061657-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061657-protein
Unique NameTCONS_00061657-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061657-protein ID=TCONS_00061657-protein|Name=TCONS_00061657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MQSYVSESVRSFATASTMSMSQLEEDGIPLELSSTSTVLDTTEQLNKIMK
SESMAENLFIMERVIVQNQYHYRQAAYRGLEDALLSSSSLTETETPEHTA
PSTPATTHKHDEPPKEEIPTKIGPNLSRLWAYECAATKSMTVTCMSWNKK
NPDLLAVGYGDNGLSNDGLGLACIWSIKNPEV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038664XLOC_038664Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061657TCONS_00061657Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 125..182
e-value: 9.7E-4
score: 17.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..122

Blast
[Close]
BLAST of TCONS_00061657-protein vs. Swiss-Prot (Human)
Match: WDR78 (WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.401e-24
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 0 
Query:   40 DTTEQLNKIMKSESMAENLFIMERVIVQNQYHYRQAAYRGL----EDALLSSSSLTETETPEHTAPSTPATTHKHDEPPKEEIPTKIGPNLSRLWAYECAATKSMTVTCMSWNKKNPDLLAVGYGDNGLSNDGLGLACIWSIKNP 180
            D  +  + I+KS+   ++LF MERV+++N +  + AAYR L    E        + E+   E     +     +     +  IP     NL RLW++ C  TK + V+ ++WNK NPDLLAVGYG  G      GLAC WSIKNP
Sbjct:  386 DEEDHSDAILKSDKFHQDLFFMERVLMENIFQPKLAAYRQLPVLKEPEPEEPEDVLESAKHEEVEEESKKEEEEEIHAEESTIPA----NLERLWSFSCDLTKGLNVSSLAWNKTNPDLLAVGYGHFGFKEQKRGLACCWSIKNP 526
The following BLAST results are available for this feature:
BLAST of TCONS_00061657-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR782.401e-2437.24WD repeat-containing protein 78 OS=Homo sapiens GN... [more]
back to top