TCONS_00061800-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061800-protein
Unique NameTCONS_00061800-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061800-protein ID=TCONS_00061800-protein|Name=TCONS_00061800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MANTNDVDELFELRNSFYIGNFQHCINEAQSLNPSSSDLRVERDVFLYRA
YIAQGKYGLVLSEVTASSPPELQGVRLLADYLQNPGKKETIIKSIESKLN
GSDFSEYFLLMASVIYFHENDTDSALRCLFQSTALECSALSVQIYISLDR
LDLAKTEIGRMQQNDEDATLTQLAMAWFNLAVGGEKCQDAYYIFQELIDK
YSSTISMLNAQATCYMRMGKFEDADSNLQEALDRDSNNPETLCNMAVLAQ
HLGKAPEVSNRFISQLRAGHDRHCFTKDYLKKEADFDRIVESYAASAKAH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038776XLOC_038776Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061800TCONS_00061800Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011990TPR-like_helical_dom
IPR006822Coatomer_esu
IPR013026TPR-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005198structural molecule activity
Vocabulary: Biological Process
TermDefinition
GO:0006890retrograde vesicle-mediated transport, Golgi to ER
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to ER
molecular_function GO:0005515 protein binding
molecular_function GO:0005198 structural molecule activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 205..238
e-value: 0.0071
score: 25.6
IPR019734Tetratricopeptide repeatPROSITEPS50005TPRcoord: 205..238
score: 8.378
NoneNo IPR availablePFAMPF04733Coatomer_Ecoord: 7..293
e-value: 1.5E-108
score: 362.6
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 23..293
e-value: 3.2E-19
score: 68.6
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 185..257
coord: 79..129
IPR006822Coatomer, epsilon subunitPIRSFPIRSF016478Epsilon-COPcoord: 5..297
e-value: 3.5E-91
score: 303.7
IPR013026Tetratricopeptide repeat-containing domainPROSITEPS50293TPR_REGIONcoord: 205..272
score: 9.294

Blast
[Close]
BLAST of TCONS_00061800-protein vs. Swiss-Prot (Human)
Match: COPE (Coatomer subunit epsilon OS=Homo sapiens GN=COPE PE=1 SV=3)

HSP 1 Score: 350.903 bits (899), Expect = 8.614e-122
Identity = 168/298 (56.38%), Postives = 223/298 (74.83%), Query Frame = 0 
Query:    2 ANTNDVDELFELRNSFYIGNFQHCINEAQSLNPSSSDLRVERDVFLYRAYIAQGKYGLVLSEVTASSPPELQGVRLLADYLQNPGKKETIIKSIESKLNGS-DFSEY-FLLMASVIYFHENDTDSALRCLFQSTALECSALSVQIYISLDRLDLAKTEIGRMQQNDEDATLTQLAMAWFNLAVGGEKCQDAYYIFQELIDKYSSTISMLNAQATCYMRMGKFEDADSNLQEALDRDSNNPETLCNMAVLAQHLGKAPEVSNRFISQLRAGHDRHCFTKDYLKKEADFDRIVESYAASA 297
              + +VDELF+++N+FYIG++Q CINEAQ +  SS +  VERDVFLYRAY+AQ K+G+VL E+  SS PELQ VR+ ADYL +  ++++I+  ++ +++ S D +   FLLMA+ IY H+ + D+ALR L Q  +LEC+A++VQI + LDRLDLA+ E+ RMQ  DEDATLTQLA AW +LA GGEK QDAYYIFQE+ DK S T+ +LN QA C+M  G++E A+  LQEALD+DS  PETL N+ VL+QHLGK PEV+NR++SQL+  H  H F K+Y  KE DFDR+V  YA SA
Sbjct:   11 GGSGEVDELFDVKNAFYIGSYQQCINEAQRVKLSSPERDVERDVFLYRAYLAQRKFGVVLDEIKPSSAPELQAVRMFADYLAHESRRDSIVAELDREMSRSVDVTNTTFLLMAASIYLHDQNPDAALRALHQGDSLECTAMTVQILLKLDRLDLARKELKRMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYQAKENDFDRLVLQYAPSA 308
The following BLAST results are available for this feature:
BLAST of TCONS_00061800-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COPE8.614e-12256.38Coatomer subunit epsilon OS=Homo sapiens GN=COPE P... [more]
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