TCONS_00061863-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00061863-protein
Unique Name	TCONS_00061863-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	596

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00061863-protein ID=TCONS_00061863-protein|Name=TCONS_00061863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp
MDDKKTIGIVDYVIFGALLLSSSLVGIYFGYKHRKRVTSAEYLLANKSMS
WFTICISLVVSFFSSVGVMGITTNIYMTGVTFSLHILTFLVPIILNAEFF
APIFRRLELISVNHYLELRFSRGVRFIGCFLFFLQYVIYLAIVLYAPSLA
LETVADVPLMATIITTGLVCTFYTTLGGMRAVIWTDVFQSMVMVIGLGTS
LVIGVINIGSFEKIYNVTSEFKRFDIDINPDPRGHQTVWGVTIGGTFSIM
AAWTISQPTMQRVIAARSLGDAKKALYGAYVGLLLIGAFLTTLAIVIFAT
YAECDLLKSGKIKSPDQVLPYYVVDNFSHIPGVTGVFIACLFSFSISTLS
SALNSLAAVFLEDIVKSFNPVLSETFQTRVSKIVACVLGVVITGLAFVVP
LIGNSIIKLVIQLFGIVSGPYFGLFVLGIFFKKSNSVGAGVGSVIGLLVG
IAMMVGQWFYPPGKNLPPVSMAQCTNVTKPDLKFIYPADPVYKDNIIADM
VSFSYMWFGFITVVLTVFIGYLVSLCHGRCNKEEFVDKILLYRYSGCCGC
CGGCCSCCDGDGETSYEPYDREVQLMMMKKDQEMEAEDDRRNDVVM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038803	XLOC_038803	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00061863	TCONS_00061863	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001734	Na/solute_symporter
IPR018212	Na/solute_symporter_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0006810	transport
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016020	membrane
molecular_function	GO:0005215	transporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001734	Sodium/solute symporter	TIGRFAM	TIGR00813	TIGR00813	coord: 42..446 e-value: 2.7E-81 score: 271.7
IPR001734	Sodium/solute symporter	PFAM	PF00474	SSF	coord: 42..446 e-value: 5.8E-43 score: 147.2
IPR001734	Sodium/solute symporter	PROSITE	PS50283	NA_SOLUT_SYMP_3	coord: 8..460 score: 54.962
IPR018212	Sodium/solute symporter, conserved site	PROSITE	PS00457	NA_SOLUT_SYMP_2	coord: 428..448

Blast

[Close]

BLAST of TCONS_00061863-protein vs. Swiss-Prot (Human)
Match: SC5AC (Sodium-coupled monocarboxylate transporter 2 OS=Homo sapiens GN=SLC5A12 PE=2 SV=2)

HSP 1 Score: 342.428 bits (877), Expect = 5.588e-110
Identity = 188/536 (35.07%), Postives = 311/536 (58.02%), Query Frame = 0

Query:    3 DKKTIGIVDYVIFGALLLSSSLVGIYFGYKHRKRVTSAEYLLANKSMSWFTICISLVVSFFSSVGVMGITTNIYMTGVTFSLHILTFLVPIILNAEFFAPIFRRLELISVNHYLELRFSRGVRFIGCFLFFLQYVIYLAIVLYAPSLALETVADVPLMATIITTGLVCTFYTTLGGMRAVIWTDVFQSMVMVIGLGTSLVIGVINIGSFEKIYNVTSEFKRFDI-DINPDPRGHQTVWGVTIGGTFSIMAAWTISQPTMQRVIAARSLGDAKKALYGAYVGLLLIGAFLTTLAIVIFATYAECDLLKSGKIKSPDQVLPYYVVDNFSHIPGVTGVFIACLFSFSISTLSSALNSLAAVFLEDIVKSFNPVLSETFQTRVSKIVACVLGVVITGLAFVVPLIGNSIIKLVIQLFGIVSGPYFGLFVLGIFFKKSNSVGAGVGSVIGLLVGIAMMVGQWFY--PPGKNLP-PVSMAQCTNVTKPDLKFIYPADPVYKDNIIADMVSFSYMWFGFITVVLTVFIGYLVSLCHGRCNKEE 534
            + K   + DYV+F AL   SS +G++F  K RK+ TS E+L+  + MS+  + +SL  SF S+V V+G  + +Y  G +F +  + +L  I+L +E F P+F R  + S   YL+LRF++ VR+    ++ +Q ++Y  +V+YAP+LAL  V    L  ++  TG+VCTFY TLGG++AV+WTD FQ +VM++G  T L+ G  + G F  +   ++   R  I D + DP    T W +T+GGTF+ +  + ++Q T+QR I+ ++   AK ALY   +GL +I        +++++ + +CD   SG I +PDQ++PY+V++ F+ +PG+ G+F+AC FS ++ST++S++N+LA V  ED VKS  P LS+   T +SK +  + GV+ T +A    ++G  +++  + + G+  GP  GLF LGI F   N  GA  G + G+ +   + +G + Y  P  K  P P+S  QC    K ++    P     +  I     S SY+++  +  +  +  G ++SL  GR   E+
Sbjct:    2 EVKNFAVWDYVVFAALFFISSGIGVFFAIKERKKATSREFLVGGRQMSFGPVGLSLTASFMSAVTVLGTPSEVYRFGASFLVFFIAYLFVILLTSELFLPVFYRSGITSTYEYLQLRFNKPVRYAATVIYIVQTILYTGVVVYAPALALNQVTGFDLWGSVFATGIVCTFYCTLGGLKAVVWTDAFQMVVMIVGFLTVLIQGSTHAGGFHNVLEQSTNGSRLHIFDFDVDPLRRHTFWTITVGGTFTWLGIYGVNQSTIQRCISCKTEKHAKLALYFNLLGLWIILVCAVFSGLIMYSHFKDCDPWTSGIISAPDQLMPYFVMEIFATMPGLPGLFVACAFSGTLSTVASSINALATVTFEDFVKSCFPHLSDKLSTWISKGLCLLFGVMCTSMAVAASVMGG-VVQASLSIHGMCGGPMLGLFSLGIVFPFVNWKGALGGLLTGITLSFWVAIGAFIYPAPASKTWPLPLSTDQC---IKSNVTATGPPVLSSRPGIADTWYSISYLYYSAVGCLGCIVAGVIISLITGRQRGED 533

The following BLAST results are available for this feature:

BLAST of TCONS_00061863-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00061863-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC5AC	5.588e-110	35.07	Sodium-coupled monocarboxylate transporter 2 OS=Ho...	[more]

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TCONS_00061863-protein (polypeptide) - C. hemisphaerica