TCONS_00061870-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061870-protein
Unique NameTCONS_00061870-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length219

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061870-protein ID=TCONS_00061870-protein|Name=TCONS_00061870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MISNRSEKTGMKRPVKTSSSEPANKIMKKSTIDSPGAVKPGHWTQGLKQA
LQNPKNIILETEKCSVIHDKYPKAKKHFLVIAKGDVSSMKSLNRSHVPLI
NEMIKIGRQLESTESDTNPSIRFRMGFHAVPSMTLLHMHVISTDFDSPSL
KNKRHWNSFTTDFFRPANSILSELSEKGCITIDTLYYKQLLESSLKCHIC
NADLRNIPRLKEHVRTHFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038805XLOC_038805Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061870TCONS_00061870Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032566Znf-C2HE
IPR011146HIT-like
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032566Aprataxin, C2HE/C2H2/C2HC zinc fingerPFAMPF16278zf-C2HEcoord: 160..218
e-value: 2.6E-12
score: 46.9
NoneNo IPR availablePFAMPF11969DcpS_Ccoord: 52..155
e-value: 2.5E-26
score: 92.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
IPR011146HIT-like domainGENE3D3.30.428.10coord: 42..151
e-value: 5.1E-27
score: 94.0
IPR011146HIT-like domainPROSITEPS51084HIT_2coord: 44..150
score: 9.974
IPR011146HIT-like domainSUPERFAMILY54197HIT-likecoord: 41..200
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 197..217
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 195..219
score: 8.621

Blast
[Close]
BLAST of TCONS_00061870-protein vs. Swiss-Prot (Human)
Match: APTX (Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.922e-52
Identity = 79/180 (43.89%), Postives = 126/180 (70.00%), Query Frame = 0 
Query:   41 GHWTQGLKQALQNPKNIILETEKCSVIHDKYPKAKKHFLVIAKGDVSSMKSLNRSHVPLINEMIKIGRQLESTESDTNPSIRFRMGFHAVPSMTLLHMHVISTDFDSPSLKNKRHWNSFTTDFFRPANSILSELSEKGCITI-DTLYYKQLLESSLKCHICNADLRNIPRLKEHVRTHFS 219
            GHW+QGLK ++Q+PK  + + E+  VI DKYPKA+ H+LV+    +SS+K++ R H+ L+  M  +G ++   +   +  +RFR+G+HA+PSM+ +H+HVIS DFDSP LKNK+HWNSF T++F  + +++  + E G +T+ D +   +LL+  L+CH C   L +IP+LKEH+R H++
Sbjct:  179 GHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV-IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGM--PELLKLPLRCHECQQLLPSIPQLKEHLRKHWT 355
The following BLAST results are available for this feature:
BLAST of TCONS_00061870-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
APTX2.922e-5243.89Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2[more]
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