TCONS_00062061-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062061-protein
Unique NameTCONS_00062061-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062061-protein ID=TCONS_00062061-protein|Name=TCONS_00062061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=992bp
ATEGESLGVTISTTENTVTACASMTRFKPTNQACVDDPESKSCLFRRNYF
MGRCPVFDEDLKFKYSDIPCYKGSLNRTPHLNRYGMCMLGTGGVQSFNNE
GKLYQFISAPGSGRYIGAVVSTVDGDKNSNFVNKVNLKDDTTFLRSAEVK
NDDSKSFTAQHAMVGYSTAKGNFTGEVLPGLASGSPRAALFGGQVMIYQY
RLKNGTATPDDLDDDSELTIKQIITNPAPSKGGPSLFGASVAAIDINGDG
FDDLAVGAPLFANSVGNRIGQDEGRVFIFINNKNGQFSFKQNMTLEGENV
ESSRFGSTVVNIGDINGDGSDDLAVGAPWGGKDGNGAVYIYNVRDGQLTK
THSQVLSSPSGAGFGYSISSAKIDTRVYPALAVGAPESGRVFLFKAKTII
TLEDNLWIDRITIPTDESNCEFGKVKYQCITFRANLKDASTNAPAKFDLE
ITFEADVRDSAAAGRALIYDNSTKTLVKSVTNKVTFIRGRSLPYQHTIYI
SIDKATNFESPVRLTTSYRTFASKNNCEDGPCAILDQFGALSGFAVVKYL
KQCGTDQVCDVDLDIEDTEIRVKKGASSVIEPLYIGSFNDEIKLIAKVRN
RNESAYQAKMEINFHEDFALLQISVNGRDSIIPEYNGENKNGTGNVVKFL
LDNPILEREVVDVEAQFIIKSLARPKFFEYPFNLTVNSTGNDINQSNNRK
TIKLPMKIQSCVQISLDRAEGGDARNEAPKLLYDNLKKPIARPQSAQEAG
PKVEYTILVQNSGRVPIDNMSIDVTLVDRVGRTNIIYITELSVEGQTCEL
NKINTGKLFGSQPTQTNDVAARRKRRDVIQRTDTRPPILNCLNGHCQTMT
CKNVLNVPVDGIRRLKLSMAVYLEALQKFQSDEMVITVTPKFGGTFGSIV
EQAQECPAKIELRQPFGKITAENSDIKRVEWWIVLVAVVGALIFLAIFCA
VLYRIGFFKRHRLEEESPLHQHHIETYQRKPQADGYGSGSDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038895XLOC_038895Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062061TCONS_00062061Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000413Integrin_alpha
IPR013519Int_alpha_beta-p
IPR013649Integrin_alpha-2
IPR018184Integrin_alpha_C_CS
IPR032695Integrin_dom
Vocabulary: Cellular Component
TermDefinition
GO:0008305integrin complex
Vocabulary: Biological Process
TermDefinition
GO:0007155cell adhesion
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007155 cell adhesion
cellular_component GO:0008305 integrin complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000413Integrin alpha chainPRINTSPR01185INTEGRINAcoord: 304..328
score: 55.12
coord: 230..250
score: 43.55
coord: 941..960
score: 44.27
coord: 161..173
score: 33.21
coord: 390..409
score: 15.73
IPR013519Integrin alpha beta-propellorSMARTSM00191int_alpha_rptcoord: 360..406
e-value: 4.4
score: 15.5
coord: 233..294
e-value: 1.8E-12
score: 57.4
coord: 301..357
e-value: 4.0E-15
score: 66.3
coord: 160..214
e-value: 32.0
score: 7.7
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 292..350
score: 13.037
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 150..207
score: 6.892
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 223..288
score: 12.251
IPR013519Integrin alpha beta-propellorPROSITEPS51470FG_GAPcoord: 351..411
score: 6.657
NoneNo IPR availableGENE3D2.60.40.1460coord: 401..558
e-value: 7.1E-11
score: 42.2
NoneNo IPR availableGENE3D1.20.5.930coord: 926..962
e-value: 7.6E-9
score: 34.7
NoneNo IPR availablePFAMPF13517VCBScoord: 245..325
e-value: 3.8E-10
score: 40.1
NoneNo IPR availableGENE3D2.60.40.1510coord: 559..706
e-value: 3.3E-10
score: 39.8
NoneNo IPR availableGENE3D2.60.40.1530coord: 727..889
e-value: 2.7E-10
score: 39.2
NoneNo IPR availableGENE3D2.130.10.130coord: 1..400
e-value: 9.2E-52
score: 176.0
NoneNo IPR availableSUPERFAMILY69318Integrin alpha N-terminal domaincoord: 49..396
IPR013649Integrin alpha-2PFAMPF08441Integrin_alpha2coord: 396..851
e-value: 6.7E-34
score: 117.5
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved sitePROSITEPS00242INTEGRIN_ALPHAcoord: 953..960
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 581..703
IPR032695Integrin domainSUPERFAMILY69179Integrin domainscoord: 740..882

Blast
[Close]
BLAST of TCONS_00062061-protein vs. Swiss-Prot (Human)
Match: ITAV (Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 5.404e-46
Identity = 252/1003 (25.12%), Postives = 424/1003 (42.27%), Query Frame = 0 
Query:    5 ESLGVTISTTENTVTACASMTRFKPTNQACVDDPESKSCLFRRNYFMGRCPVFDEDLKFKYSDIPCYKGSLNRTPHLNRYGMCMLGTGGVQSFNNEGKLYQFISAPGSGRYIGAVVSTVDGDKNSNFVNKVNLK------DDTTFLRSAEVKNDDSKSFTAQHAMVGYSTAKGNFTGEVLPGLASGSPRAALFGGQVMIYQYRLKNGTATPDDLDDDSELTIKQIITNPAPSKGGPSLFGASVAAIDINGDGFDDLAVGAPLFANSVGNRIGQDEGRVFIFINNKNGQFSFKQNMTLEGENVESSRFGSTVVNIGDINGDGSDDLAVGAPWGGKDGNGAVYIYNVRDGQLTKTHSQVLSSPSGA-----GFGYSISSAK-IDTRVYPALAVGAPESGRVFLFKAKTIITLEDNLWIDRITIPTDESNCEF--GKVKYQCITFRANLK-DASTNAPAKFDLEITFEAD-VRDSAAAGRAL-IYDNSTKTLVKSVTNKVTFIRGRSLPYQHTIYISIDKATNFE--SPVRLTTSYRTFASKNNCEDGPCAILDQFGALSGFAVVKYLKQCGTDQVCDVDLDIEDTEIRVKKGASSVIEPLYIGSFNDEIKLIAKVRNRNESAYQAKM--EINFHEDFALLQISVNGRDSIIPEYNGENKNGTGNVVKFLLDNPILEREVVDVEAQFIIKSLARPKFFEYPFNLTVNSTGNDINQSNNRKTIKLPMKIQSCVQISLDRAEGGDARNEAPKLLYDNLKKPIARPQSAQEAGPKVEYTILVQNSGRVPIDNMSIDVTLVDRVGRTNIIYITELSVEG-QTC----ELNKINTGKLFGSQPTQTNDVAARRKRRD-VIQRTDTRPP-----ILNCLNGHCQTMTCKNVLNVPVDGIRRLKLSMAVYLEAL---QKFQSDE-MVITVTPKFGGTFGSIVEQAQECPAKIELRQPFGKITAENSDIKRVEW-----------WIVLVAVVGALIFLAIFCAVLYRIGFFKR 960
            +  G ++ + ++ + ACA +  ++ T      +P            +G C + D     +Y+  PC      R+  ++  G      G    F    ++   +  PGS  + G ++S    D+ +  V+K +        ++    R+A+   DDS         +GYS A G+F G+ +    SG PRAA   G  M+Y Y  KN ++           T +Q+           + FG SVAA DINGD + D+ +GAPLF +   +   Q+ G+V + +   +G F   Q   L G  V  +RFGS +  +GD++ DG +D+A+ AP+GG+D  G VYI+N R   L    SQ+L     A      FGYS+  A  ID   YP L VGA    R  L++A+ +IT+   L +    +  D   C      +K  C   R  LK D     P K + ++    D ++   A  RAL +Y  S      S +  +T  RG  +  +  I    D++   +  +P+ +   YR          G   IL+QF   +       L  CG D VC   L++            S  + +YIG  ++ + LI K +N+ E AY+A++   I    DF  +  +      +   +  EN+  T  VV   L NP+     +    +F +   +        F+L + S+ N  ++ +   + K+ + + + V+I       G +  +   L   N +     P++ ++ GP V++   ++N+G        + +    +     ++YI    ++G   C    E+N +   K+   Q T+ ND  A +  RD +I + D          L C    C  + C+      V  + R K S  +Y+++L   + F + E    + + K   +F  I     E P K     P   IT        V W           W++++AV+  L+ LA+   V+YR+GFFKR
Sbjct:  122 QWFGASVRSKQDKILACAPLYHWR-TEMKQEREP------------VGTCFLQDGTKTVEYA--PC------RSQDIDADGQGFCQGGFSIDFTKADRV--LLGGPGSFYWQGQLIS----DQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDS--------YLGYSVAVGDFNGDGIDDFVSGVPRAARTLG--MVYIYDGKNMSSL-------YNFTGEQM----------AAYFGFSVAATDINGDDYADVFIGAPLFMDRGSDGKLQEVGQVSVSLQRASGDF---QTTKLNGFEV-FARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEGQWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPRKLNFQVELLLDKLKQKGAIRRALFLYSRS-----PSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRLDYRTAADTTGLQPILNQFTPANISRQAHILLDCGEDNVCKPKLEVS---------VDSDQKKIYIGD-DNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGVVRNNEALARLSCAFKTENQ--TRQVV-CDLGNPMKAGTQLLAGLRFSVHQQSEMD-TSVKFDLQIQSS-NLFDKVSPVVSHKVDLAVLAAVEIR------GVSSPDHVFLPIPNWEHK-ENPETEEDVGPVVQHIYELRNNGPSSFSKAMLHLQWPYKYNNNTLLYILHYDIDGPMNCTSDMEINPLRI-KISSLQTTEKNDTVAGQGERDHLITKRDLALSEGDIHTLGCGVAQCLKIVCQ------VGRLDRGK-SAILYVKSLLWTETFMNKENQNHSYSLKSSASFNVI-----EFPYK---NLPIEDITNSTLVTTNVTWGIQPAPMPVPVWVIILAVLAGLLLLAVLVFVMYRMGFFKR 1023
The following BLAST results are available for this feature:
BLAST of TCONS_00062061-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ITAV5.404e-4625.12Integrin alpha-V OS=Homo sapiens GN=ITGAV PE=1 SV=... [more]
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