TCONS_00062106-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062106-protein
Unique Name	TCONS_00062106-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	307

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062106-protein ID=TCONS_00062106-protein|Name=TCONS_00062106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=307bp
GDIAFAVNQYYSVTGDLDWIRNYGFPIIYQSAVFWESRVTFEKESGTYWI
NDVMPPDEYHYPVNNSVYTNVIAQINFRLAIKFADLLDIKIPSHWEDIAA
SIYIPFDEKLQYHPEYDGFDITDPKSVVKQADTILINFPLMYPMDKDTRK
NDLFLYGKITDSNGPAMTHSMFSIGWNEIGEKQNADQAFQKNYENIQPPF
HVWSEIRKGDGAANFITAAGGYLQSIIFGYAGLRLRDDGLHFDMQPLPGN
KPYCLNGIKYRNDSLQFCWLRIGQCSVRNSSISDNEFLTRIFLKKNDSNC
IGKIVNH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038929	XLOC_038929	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062106	TCONS_00062106	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005195	Glyco_hydro_65_M
IPR008928	6-hairpin_glycosidase-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0003824	catalytic activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.50.10.10		coord: 124..226 e-value: 2.4E-26 score: 92.4 coord: 1..123 e-value: 7.7E-38 score: 130.3
None	No IPR available	GENE3D	2.60.420.10		coord: 227..285 e-value: 8.8E-4 score: 18.6
IPR005195	Glycoside hydrolase, family 65, central catalytic	PFAM	PF03632	Glyco_hydro_65m	coord: 1..119 e-value: 1.6E-26 score: 93.0
IPR008928	Six-hairpin glycosidase-like	SUPERFAMILY	48208	Six-hairpin glycosidases	coord: 2..273

Blast

[Close]

BLAST of TCONS_00062106-protein vs. Swiss-Prot (Human)
Match: PGGHG (Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens GN=PGGHG PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.318e-64
Identity = 107/268 (39.93%), Postives = 153/268 (57.09%), Query Frame = 0

Query:    1 GDIAFAVNQYYSVTGDLDWIRNYG-FPIIYQSAVFWESRVTFEKESGTYWINDVMPPDEYHYPVNNSVYTNVIAQINFRLAIKFADLLDIKIPSHWEDIAASIYIPFDEKLQYHPEYDGFDITDPKSVVKQADTILINFPLMYPMDKDTRKNDLFLYGKITDSNGPAMTHSMFSIGWNEIGEKQNADQAFQKNYENIQPPFHVWSEIRKGDGAANFITAAGGYLQSIIFGYAGLRLRDDGLHFDMQPLPGNKPYCLNGIKYRNDSLQF 267
            G +  A   YY  T DL   R  G + ++   A FW SRV +      Y +  VM PDEYH  VNNSVYTNV+ Q + R A   A  L + IPS W  +A  I +PFD +  +HPE+DG++   P  VVKQAD +L+ +P+ + +  D R+ +L +Y  +T   GPAMT SMF++GW E+ +   A     +++ N+  PF VW+E   G GA NF+T  GG+LQ+++FG  G R+   G+ FD   L G     ++GI Y+ + L F
Sbjct:  372 GAVVLAFELYYHTTQDLQLFREAGGWDVVRAVAEFWCSRVEWSPREEKYHLRGVMSPDEYHSGVNNSVYTNVLVQNSLRFAAALAQDLGLPIPSQWLAVADKIKVPFDVEQNFHPEFDGYE---PGEVVKQADVVLLGYPVPFSLSPDVRRKNLEIYEAVTSPQGPAMTWSMFAVGWMELKDAVRARGLLDRSFANMAEPFKVWTENADGSGAVNFLTGMGGFLQAVVFGCTGFRVTRAGVTFDPVCLSGISRVSVSGIFYQGNKLNF 636

The following BLAST results are available for this feature:

BLAST of TCONS_00062106-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062106-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PGGHG	2.318e-64	39.93	Protein-glucosylgalactosylhydroxylysine glucosidas...	[more]

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TCONS_00062106-protein (polypeptide) - C. hemisphaerica