TCONS_00062267-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062267-protein
Unique NameTCONS_00062267-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062267-protein ID=TCONS_00062267-protein|Name=TCONS_00062267-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MLKNNLITSEPIIFLYSIIYFINLSILPQLVLQKVCLEKYDDGLHGNGTT
SSSLCEEKSSTVITADMQKESSHWCFAILASSQIPSILTVLIWGPISDVI
GRKKAILLVPIMSILQNIIFLLCSYYMNSSIIYLCVGMFLACIFGEFPGV
LALSYGFIADVTTGRKEKSRTSRMALVDFAGNLAGLPAGLFAGQLLKHLG
FTAVFGLSIGINLIILLYIIFLLPEELYNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039025XLOC_039025Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062267TCONS_00062267Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.20.1250.20coord: 10..228
e-value: 8.9E-22
score: 76.8
IPR011701Major facilitator superfamilyPFAMPF07690MFS_1coord: 13..226
e-value: 6.2E-14
score: 51.6
IPR020846Major facilitator superfamily domainPROSITEPS50850MFScoord: 9..230
score: 9.782
IPR020846Major facilitator superfamily domainCDDcd06174MFScoord: 78..205
e-value: 1.87235E-4
score: 39.2193
IPR020846Major facilitator superfamily domainSUPERFAMILY103473MFS general substrate transportercoord: 71..226

Blast
[Close]
BLAST of TCONS_00062267-protein vs. Swiss-Prot (Human)
Match: PCFT (Proton-coupled folate transporter OS=Homo sapiens GN=SLC46A1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.101e-17
Identity = 56/218 (25.69%), Postives = 106/218 (48.62%), Query Frame = 0 
Query:   10 EPIIFLYSIIYFINLSILPQLVLQKVCLEKYDDGLHGNGTTSSSLCEEKSSTVITADMQKESSHWCFAILASSQIPSILTVLIWGPISDVIGRKKAILLVPIMSILQNIIFLLCSYYMNSSIIYLCVGMFLACIFGEFPGVLALSYGFIADVTTGRKEKSRTSRMALVDFAGNLAGLPAGLFAGQLLKHLGFTAVFGLSIGINLIILLYIIFLLPEEL 227
            EP++FL +    +   +  Q +  +     +   L  NGT     C  +S+     +++  +SHW   +     +  + +  + G  SD +GR+  ++L  +  +LQ ++ +     +   + Y  +G  L  + G+F G+LA S+  +ADV++ R   SRT RMAL++ +  +AG+ A L  G  L+  G+   F L++ + + + LY  F   E L
Sbjct:   26 EPLVFLANFALVLQGPLTTQYLWHR-----FSADLGYNGTRQRGGCSNRSADPTMQEVETLTSHWTLYMNVGGFLVGLFSSTLLGAWSDSVGRRPLLVLASLGLLLQALVSVFV-VQLQLHVGYFVLGRILCALLGDFGGLLAASFASVADVSSSR---SRTFRMALLEASIGVAGMLASLLGGHWLRAQGYANPFWLALALLIAMTLYAAFCFGETL 234
The following BLAST results are available for this feature:
BLAST of TCONS_00062267-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PCFT6.101e-1725.69Proton-coupled folate transporter OS=Homo sapiens ... [more]
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