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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00062413-protein ID=TCONS_00062413-protein|Name=TCONS_00062413-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1143bp MLNKIYPKEEMELSDLDPLPSNEEKNELSGGVDEEGFPQQFDGASSYTSG TSDADVYFIQAASEGNLLRVQRFITELKRGDYKRFENERDQLFKGFSALH MAARYDKVDIVNFLLDNEAPIEQKDEEDENTPLLLAIKYNCDETAKQLIT RGASVCSCNKYGTYALHFAARRGNKDLCEMILNNPCCKLDEQIDKSGGSA LHSAMLSGNVEVVALLITRGADICHGNNEGEQPIHLAAAEDHSDIIVMLA KGVLSKEPNTNLHRELQIQFVNYGTGEKDTALHIAAQGGYIETVKTLISI GAKVNVRTDTDQTPLHLAAIGGQLEVVRYLLMNNAKVGLRDNDQMTPLHK AAQFGRLETLKFLLERGARDDVRDRDGFTPLMCAVWKGHNHVVEYLLERN PARIDRLLGINDINSRCVLHLAIEEDCLSTLEMLLKGKGKKLINDTDKDY KSCVHYAAEKPVDDMLTMLINNGASIDVSDIDEKTPLHTASELGNLSCVK VLAKEAPGIINATDAKGMSALHLAAMRGHIKVSETLIELGAEISSRDEWN WTPLDYAARHGYSKTLEVLIENEAKVDAMGTNDATPLHHASQYGHVDCIK VLLDNGASLKAANNEGKTCLDLAVESYQKEACLALVNHERWEQMMRHVYP SQPPPMEKLIRLAPDIAEVVLNKCVRKEDMKTKGRTEYNTIYDFGYLDKL PDEKNLEAPYFGPSVMIKYRRSNLLQHPLTVRLINYKWARMGRWLYIGSL TSYILFVALLTSLLVVEKDHDQDLKEKNQTTTNFCDNRPKDKIFVGIVPW LTLGVACFQIIKECIQCLYLGKKYLKDVVNWFEFILYGSTFSFMLPFIMC QVGGHENYKFLYDLKWIAGAISILCAWFNFLLYLKRAPFFGIYVLMFIEV LNTLLVVLAVFSILILAFALSFYCLFKLPYELADDDDGNTAFNHLGTGIV RTIVMMIGELDYRDTFTEKFNDNTKKYLPYKGVSYLVFVFFLIIMVIVVM NLLVGLAIGDIEAVRNNAYIRMLRGQVRILEILERTYPKFILRRIHTKNS EVEKPKRYMNNWERFMDWISTLDFDALQEDQQDMTSREIRMREQITNQEK ELEKTKSKMRVLTSAIEEQAEMMRVMVATIDKIPKHELKKYIH Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO:0005216 | ion channel activity |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
GO:0006811 | ion transport |
Vocabulary: Cellular Component
Term | Definition |
GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006811 |
ion transport |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016020 |
membrane |
molecular_function |
GO:0005216 |
ion channel activity |
molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 1088..1115 |
None | No IPR available | GENE3D | 1.10.287.70 | | coord: 748..1014 e-value: 2.9E-6 score: 26.3 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..47 |
None | No IPR available | CDD | cd00204 | ANK | coord: 280..397 e-value: 5.80996E-40 score: 144.449 |
None | No IPR available | CDD | cd00204 | ANK | coord: 87..217 e-value: 1.52378E-27 score: 109.01 |
None | No IPR available | CDD | cd00204 | ANK | coord: 477..603 e-value: 6.68276E-32 score: 121.337 |
IPR002110 | Ankyrin repeat | PRINTS | PR01415 | ANKYRIN | coord: 517..532 score: 38.78 coord: 598..612 score: 31.56 |
IPR002110 | Ankyrin repeat | SMART | SM00248 | ANK_2a | coord: 482..512 e-value: 0.084 score: 22.0 coord: 549..578 e-value: 0.056 score: 22.6 coord: 161..191 e-value: 2.3 score: 17.2 coord: 376..406 e-value: 4.9E-5 score: 32.7 coord: 229..260 e-value: 90.0 score: 11.9 coord: 310..339 e-value: 0.0011 score: 28.3 coord: 277..306 e-value: 4.5E-5 score: 32.8 coord: 449..478 e-value: 0.083 score: 22.0 coord: 414..445 e-value: 850.0 score: 5.5 coord: 196..225 e-value: 0.014 score: 24.6 coord: 94..123 e-value: 0.0012 score: 28.1 coord: 615..645 e-value: 410.0 score: 7.9 coord: 343..374 e-value: 3.0E-4 score: 30.1 coord: 582..611 e-value: 6.5E-6 score: 35.6 coord: 516..545 e-value: 5.6E-4 score: 29.2 coord: 128..157 e-value: 0.12 score: 21.5 |
IPR002110 | Ankyrin repeat | PFAM | PF00023 | Ank | coord: 95..125 e-value: 0.0017 score: 18.6 coord: 376..401 e-value: 5.8E-4 score: 20.1 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 277..309 score: 12.636 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 549..581 score: 8.95 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 196..228 score: 12.289 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 449..481 score: 8.736 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 343..375 score: 13.197 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 310..342 score: 13.17 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 582..614 score: 13.517 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 94..126 score: 11.968 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 516..548 score: 14.158 |
IPR002110 | Ankyrin repeat | PROSITE | PS50088 | ANK_REPEAT | coord: 376..400 score: 9.084 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 425..490 e-value: 1.1E-15 score: 56.9 coord: 177..250 e-value: 1.3E-18 score: 66.3 coord: 324..383 e-value: 1.5E-26 score: 91.9 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 384..424 e-value: 2.4E-9 score: 36.4 |
IPR020683 | Ankyrin repeat-containing domain | PFAM | PF12796 | Ank_2 | coord: 156..224 e-value: 9.5E-10 score: 38.8 coord: 582..638 e-value: 2.7E-8 score: 34.2 coord: 455..547 e-value: 7.9E-14 score: 51.9 coord: 282..373 e-value: 2.9E-20 score: 72.5 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 491..553 e-value: 6.9E-21 score: 73.9 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 554..648 e-value: 4.0E-26 score: 91.0 |
IPR020683 | Ankyrin repeat-containing domain | GENE3D | 1.25.40.20 | | coord: 263..323 e-value: 2.4E-16 score: 59.2 coord: 44..176 e-value: 2.2E-26 score: 91.8 |
IPR020683 | Ankyrin repeat-containing domain | PROSITE | PS50297 | ANK_REP_REGION | coord: 94..638 score: 124.662 |
IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 271..636 |
IPR020683 | Ankyrin repeat-containing domain | SUPERFAMILY | 48403 | Ankyrin repeat | coord: 86..306 |
IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 753..1015 e-value: 4.2E-15 score: 55.5 |
Blast
BLAST of TCONS_00062413-protein vs. Swiss-Prot (Human)
Match: TRPA1 (Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=1 SV=3) HSP 1 Score: 375.17 bits (962), Expect = 8.059e-112 Identity = 316/1124 (28.11%), Postives = 542/1124 (48.22%), Query Frame = 0
Query: 59 IQAASEGNLLRVQRFITE--LKRGDYKRFENERDQLFKGFSALHMAARYDKVDIVNFLLDNEAPIEQKDEEDE--NTPLLLAIKYNCDETAKQLITRGASVCSCNKYGTYALHFAARRGNKDLCEMILNNPCCKLDEQIDKSGGSALHSAMLSGNVEVVALLITRGADICHGNNEGEQPIHLAAAEDHSDIIVMLAKGVLSKEPNTNLHRELQIQFVNYGTGEKDTALHIAAQGGYIETVKTLISIGAKVNVRTDTDQTPLHLAAIGGQLEVVRYLLMNNAK----VGLRDNDQMTPLHKAAQFGRLETLKFLLERGARDDVRDRDGFTPLMCAVWKGHNHVVEYLLERNPARIDRLLGINDINSRCVLHLAIEED-CLSTL--EMLLKGKGKKLINDTDKDYKSCVHYAAEKPVDDMLTMLINNGASIDVSDIDEKTPLHTASELGNLSCVKVLAKEAPG--IINATDAKGMSALHLAAMRGHIKVSETLIELGAEISSRDEWNWTPLDYAARHGYSKTLEVLIENEAK-VDAMGTNDATPLHHASQYGHVDCIKVLLDNGASLKAANNEGKTCLDLAVESYQKEACLALVNHERWEQMMR---HVYPSQPPPMEKLIRLAPDIAEVVLNKCVRKEDMKTKGRTEYNTIYDFGYLD-------KLPDEKNLEAPYFGPSVMIKYRRSNLLQHPLTVRLINYKWARMGRWLYIGSLTSYILFVALLTSLLVVEK---------------DHDQDLKEKNQTTTNFCDNRPKDKIFVGIVPWLTLGVACFQIIKECIQCLYLGKKYLKDVVNWFEFILYGSTFSFMLPFIMCQVGGHENYKFLYDLKWIAGAISILCAWFNFLLYLKRAPFFGIYVLMFIEVLNTLLVVLAVFSILILAFALSFYCLFKLPYELADDDDGNTAFNHLGTGIVRTIVMMIGELDYRDTFTEKFNDNTKKYLPYKGVSYLVFVFFLIIMVIVVMNLLVGLAIGDIEAVRNNAYIRMLRGQVRILEILERTYPKFILRRIHTKNSEV--EKPKRYMNNWERFMDWISTLDFDALQEDQQDMTSREIRMREQITNQEKELE----KTKSKMRVLTSAIEEQAEMMRVMVATIDKIPKHE 1137
++ EG+ +Q F + LKR D + D F LH AA +++++ + ++ +E E D+ NTPL A++ N E+ K L++RGA+ N LH A + N ++ +++L + ++ + ++G +A+ A + N E + +L+ +GA C N G PIH AA + + + +L R+L I F+N G K T LH+A Q G +E +K + GA+++ T +H AA G E+V+ ++ + + V D T LH+A+ F E +L+ GA + D +G +PL+ A ++V LL + A++D I D R LHL +++ L L E + + K+L+ D D D + +HYA + + L+ SI D+K+PLH A+ G ++ + L ++ ++N D GM+ LHLAA GH KV + L++ GA S D WT L +A+ GY++T++V+++ K D + + T LH A++ GH + +LL + A + N + + L LA+ + +KE L ++ +RW++ ++ H P P+ ++I P+ +V+L+ C+ + K +Y Y+F YL K P + + P + M++ R LL HP+ + KW G ++ +L SY L + +T L+V K DH + L N C I+ +L+ + F KE Q + Y D+ N E+I+Y + F+LP + ++ H L+W GAI++ W NFLLYL+R GI+++M +L TLL VF L+LAF LSFY L L F+ I++T MM+G+++YR++F E + N L + +S+ V F I + IV+MNLL+GLA+GDI V+ +A ++ + QV + LE+ P + LR++ K++ V KP+ + F T + +R++I N +K LE K K +++ LT +E+Q E++++++ ++ I + E
Sbjct: 36 LKVVFEGSAYGLQNFNKQKKLKRCD------DMDTFF-----LHYAAAEGQIELME-KITRDSSLEVLHEMDDYGNTPLHCAVEKNQIESVKFLLSRGANPNLRNFNMMAPLHIAVQGMNNEVMKVLLEHRTIDVNLE-GENGNTAVIIACTTNNSEALQILLKKGAKPCKSNKWGCFPIHQAAFSGSKECMEI----ILRFGEEHGYSRQLHINFMNNG---KATPLHLAVQNGDLEMIKMCLDNGAQIDPVEKGRCTAIHFAATQGATEIVKLMISSYSGSVDIVNTTDGCHETMLHRASLFDHHELADYLISVGADINKIDSEGRSPLILATASASWNIVNLLLSKG-AQVD----IKDNFGRNFLHLTVQQPYGLKNLRPEFMQMQQIKELVMDEDNDGCTPLHYACRQGGPGSVNNLLGFNVSIHSKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQLLLKKGALFLS-DHNGWTALHHASMGGYTQTMKVILDTNLKCTDRLDEDGNTALHFAAREGHAKAVALLLSHNADI-VLNKQQASFLHLALHNKRKEVVLTIIRSKRWDECLKIFSHNSPGNKCPITEMIEYLPECMKVLLDFCML-HSTEDKSCRDYYIEYNFKYLQCPLEFTKKTPTQDVIYEPLTALNAMVQNNRIELLNHPVCKEYLLMKWLAYGFRAHMMNLGSYCLGLIPMTILVVNIKPGMAFNSTGIINETSDHSEILDTTNSYLIKTC----------MILVFLS---SIFGYCKEAGQIFQQKRNYFMDISNVLEWIIYTTGIIFVLPLFV-EIPAH--------LQWQCGAIAVYFYWMNFLLYLQRFENCGIFIVMLEVILKTLLRSTVVFIFLLLAFGLSFYILLNL----------QDPFSSPLLSIIQTFSMMLGDINYRESFLEPYLRNE---LAHPVLSFAQLVSFTIFVPIVLMNLLIGLAVGDIAEVQKHASLKRIAMQVELHTSLEKKLPLWFLRKVDQKSTIVYPNKPRSGGMLFHIFCFLFCTGE-----------------IRQEIPNADKSLEMEILKQKYRLKDLTFLLEKQHELIKLIIQKMEIISETE 1079
The following BLAST results are available for this feature:
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