TCONS_00062502-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062502-protein
Unique NameTCONS_00062502-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062502-protein ID=TCONS_00062502-protein|Name=TCONS_00062502-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
MEDFVIAVKVFCQDQNWKGLGDYINESVPLITKNASKIDSAISALDAKDH
TLGYLGLIVIKLSLPNIGDFELFFNQVAQLIEGGCQTQIQSQGVDKFTHI
CHCLVKILVEQRKAFRGIYLIDQAIQKIQESPSQLTSLHPDFLQLCLVAK
CMKPAIKYLNIDIASIQESAKDAKIFLLYYYYGGMVYLALKQYEKALFFF
QVAVTTPCMVISQIMLEAYKKFLLLSIFIHGKIVALPKYTSSVVSRYLKP
LSNAYWELADAYSKHDADGVTAIANKHQQTFQNDNNVGIVKQVISSLTKK
RIQKLTKTFLTLSLVDMASRVKLRNADEAEKYLLEMIEDGSIYATIDQQA
GMVSFQNNPDRFNSNNVLEKIHSEMEKCIRMNEQLITMDNDMQQNQQYVH
KMMSMTHLDDTNRVEEIMMD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039165XLOC_039165Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062502TCONS_00062502Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 288..378
e-value: 1.9E-15
score: 67.3
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 255..356
e-value: 1.2E-14
score: 54.6
NoneNo IPR availableSMARTSM00753PINTcoord: 288..378
e-value: 1.9E-15
score: 67.3
NoneNo IPR availableGENE3D1.20.58.280coord: 142..282
e-value: 0.0044
score: 16.6
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 283..366
e-value: 1.1E-15
score: 56.9
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 289..363

Blast
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BLAST of TCONS_00062502-protein vs. Swiss-Prot (Human)
Match: CSN3 (COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3)

HSP 1 Score: 414.846 bits (1065), Expect = 2.483e-143
Identity = 202/415 (48.67%), Postives = 284/415 (68.43%), Query Frame = 0 
Query:    1 MEDFVIAVKVFCQDQNWKGLGDYINESVPLITKNASKIDSAISALDAKDHTLGYLGLIVIKLSLPNIGDFELFFNQVAQLIEGGCQTQIQSQGVDKFTHICHCLVKILVEQRKAFRGIYLIDQAIQKIQESPSQLTSLHPDFLQLCLVAKCMKPAIKYLNIDIASI--QESAKDAKIFLLYYYYGGMVYLALKQYEKALFFFQVAVTTPCMVISQIMLEAYKKFLLLSIFIHGKIVALPKYTSSVVSRYLKPLSNAYWELADAYSKHDADGVTAIANKHQQTFQNDNNVGIVKQVISSLTKKRIQKLTKTFLTLSLVDMASRVKLRNADEAEKYLLEMIEDGSIYATIDQQAGMVSFQNNPDRFNSNNVLEKIHSEMEKCIRMNEQLITMDNDMQQNQQYVHKMMSMTHLDDTNR 413
            +E FV +V+          L + IN+S  L+ KN S +D+ + ALD ++H+LG L ++ +K S+P++ DFE  F+QV QL    C  +      D F  +CH L   LVE+++  RGI ++ QAI K+Q + +QLTS+H D  QLCL+AKC KPA+ YL++D+  I  +  A DAK FL YYYYGGM+Y  LK +E+AL+F++ A+TTP M +S IMLE+YKK++L+S+ + GK+  LPKYTS +V R++KPLSNAY ELA  YS ++   +  + NKH +TF  DNN+G+VKQ +SSL KK IQ+LTKTFLTLSL DMASRV+L    EAEKY+L MIEDG I+A+I+Q+ GMVSF +NP+++N+  +L  I  EM KCI ++E+L  MD ++  N Q+V K M     D  N+
Sbjct:    5 LEQFVNSVRQLSAQGQMTQLCELINKSGELLAKNLSHLDTVLGALDVQEHSLGVLAVLFVKFSMPSVPDFETLFSQV-QLFISTCNGEHIRYATDTFAGLCHQLTNALVERKQPLRGIGILKQAIDKMQMNTNQLTSIHADLCQLCLLAKCFKPALPYLDVDMMDICKENGAYDAKHFLCYYYYGGMIYTGLKNFERALYFYEQAITTPAMAVSHIMLESYKKYILVSLILLGKVQQLPKYTSQIVGRFIKPLSNAYHELAQVYSTNNPSELRNLVNKHSETFTRDNNMGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSFHDNPEKYNNPAMLHNIDQEMLKCIELDERLKAMDQEITVNPQFVQKSMGSQEDDSGNK 418
The following BLAST results are available for this feature:
BLAST of TCONS_00062502-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSN32.483e-14348.67COP9 signalosome complex subunit 3 OS=Homo sapiens... [more]
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