TCONS_00062514-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062514-protein
Unique NameTCONS_00062514-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length202

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062514-protein ID=TCONS_00062514-protein|Name=TCONS_00062514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
MNQIKGRNQIQYILVGSVPTGNLKFLLHRLRGLCEEAALQDKYFEDHESV
YVMKDSSNSSKNFHLRVRRSLIQSDAPHQLRYLGTSETGDKSRAASMRSC
IEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKG
VFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQK
RL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039174XLOC_039174Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062514TCONS_00062514Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019095Mediator_Med18_met/fun
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019095Mediator complex, subunit Med18, metazoa/fungiPFAMPF09637Med18coord: 52..200
e-value: 2.2E-17
score: 63.6

Blast
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BLAST of TCONS_00062514-protein vs. Swiss-Prot (Human)
Match: MED18 (Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.312e-52
Identity = 86/195 (44.10%), Postives = 130/195 (66.67%), Query Frame = 0 
Query:    8 NQIQYILVGSVPTGNLKFLLHRLRGLCEEAALQDKYFEDHESVYVMKDSSNSSKNFHLRVRRSLIQSDAPHQLRYLGTSETGDKSRAASMRSCIEVDCTENIRAFLEHIGFQFDHETILRGYLFKKGRMKICVSRLHKIPEKGVFQNAMQMTDSYLVEVTLNTLVQQDSLCEDMKAFAEYLKPIVVLDKLDQKRL 202
            N ++Y+L GSV   +L+ L+HRLRGLC+   ++ + F DHE V+++K    S   F LR RRS+ ++ AP  LRYLG  E GDK+R A +R+C+++  +EN+  FL  +GF+ DHE + +G+LF+KG MKI V ++ +I   G   +   ++ SYLVE+++     QD + +DMK FAE LKP+V L+K+D KRL
Sbjct:   17 NMMEYLLQGSVLDHSLESLIHRLRGLCDN--MEPETFLDHEMVFLLKGQQASP--FVLRARRSMDRAGAPWHLRYLGQPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKGHLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVELSVVAPAGQDMVSDDMKNFAEQLKPLVHLEKIDPKRL 207
The following BLAST results are available for this feature:
BLAST of TCONS_00062514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED187.312e-5244.10Mediator of RNA polymerase II transcription subuni... [more]
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