TCONS_00062558-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062558-protein
Unique NameTCONS_00062558-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length121

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062558-protein ID=TCONS_00062558-protein|Name=TCONS_00062558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MSRHEGVSCDSCNKGNFRGKRYKCLICFDYDLCSNCHDAGTTTTQHTSNH
PMQCIITRSDFELFYGGESLQYDNPASYSFVCPHCGKLGYSELQLLEHVN
TDHSSVSTEVVSEKKLIATLL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039194XLOC_039194Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062558TCONS_00062558Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000433Znf_ZZ
IPR008598Di19_Zn_binding_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 3..48
e-value: 5.3E-11
score: 52.6
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 4..47
e-value: 3.1E-12
score: 46.0
IPR000433Zinc finger, ZZ-typePROSITEPS01357ZF_ZZ_1coord: 9..36
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 3..50
score: 13.479
IPR008598Drought induced 19 protein type, zinc-binding domainPFAMPF05605zf-Di19coord: 79..111
e-value: 1.9E-7
score: 31.2
NoneNo IPR availableCDDcd02338ZZ_PCMF_likecoord: 7..55
e-value: 2.1746E-17
score: 70.0684
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..64

Blast
[Close]
BLAST of TCONS_00062558-protein vs. Swiss-Prot (Human)
Match: KCMF1 (E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 7.922e-53
Identity = 71/111 (63.96%), Postives = 94/111 (84.68%), Query Frame = 0 
Query:    1 MSRHEGVSCDSCNKGNFRGKRYKCLICFDYDLCSNCHDAGTTTTQHTSNHPMQCIITRSDFELFYGGESLQYDNPASYSFVCPHCGKLGYSELQLLEHVNTDHSSVSTEVV 111
            MSRHEGVSCD+C KGNFRG+RYKCLIC+DYDLC++C+++G TTT+HT++HPMQCI+TR DF+L+YGGE+   + P   SF CP+CGK+GY+E  L EHV ++H+  STEV+
Sbjct:    1 MSRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQCILTRVDFDLYYGGEAFSVEQP--QSFTCPYCGKMGYTETSLQEHVTSEHAETSTEVI 109
The following BLAST results are available for this feature:
BLAST of TCONS_00062558-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCMF17.922e-5363.96E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens ... [more]
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