TCONS_00062623-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062623-protein
Unique NameTCONS_00062623-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062623-protein ID=TCONS_00062623-protein|Name=TCONS_00062623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MADGQDGYTWQIAYVYLFNLIVGAGALTMPQAFAQTGWVLGTVAMAVLAL
MSFCTSTFMIEAMSIGNAMIRLKNQKQQPNVISRTPDDPDDSGNELEPAE
GSPLLINSDEHSSGDLYGIDKKVEMGDLAEMFFSKAGLIAYYVVIALYLY
GDLAIYAAAVPKSMTQAICGGGSKLFENGDLPCGNVSSMSVFDMYRITLL
IFVVCLCPFVFFNLAKTKFLQIATTIFRWAAFLCMVSLAVNRVVHKKSTH
RAVIFEFNALPNFFGVAVYSFMCHHSLPSIITPVTNKRRILYVLFGDFVA
VFFFYMLLVTTAVFAFKVDDLKDLYTLSFTDAPDVLKYFLELFPTFTLST
NFPIIAITLRENLKNLFLKENKYYGLFVRRFLFPLAVIIPPIIIAFATDD
VEMLVSITGTYAGAVIQYVVPVMLVFYGRRSVLAKLGNYINKNRSPFRSQ
GWVYLIVTWYFVCTVFVTVNKFYKFK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039244XLOC_039244Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062623TCONS_00062623Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013057AA_transpt_TM
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013057Amino acid transporter, transmembrane domainPFAMPF01490Aa_transcoord: 9..64
e-value: 1.1E-9
score: 37.4
coord: 127..442
e-value: 1.8E-9
score: 36.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..109

Blast
[Close]
BLAST of TCONS_00062623-protein vs. Swiss-Prot (Human)
Match: TM104 (Transmembrane protein 104 OS=Homo sapiens GN=TMEM104 PE=1 SV=2)

HSP 1 Score: 382.104 bits (980), Expect = 1.514e-128
Identity = 218/484 (45.04%), Postives = 296/484 (61.16%), Query Frame = 0 
Query:    8 YTWQIAYVYLFNLIVGAGALTMPQAFAQTGWVLGTVAMAVLALMSFCTSTFMIEAMSIGNAMI---RLKNQKQQPNVISRTPDDPDD-SGNELEPAEGSPLLINSDEHSSGDLYGIDKKVEMGDLAEMFFSKAGLIAYYVVIALYLYGDLAIYAAAVPKSMTQAICGGGSKLFENGDLPCGNVSS------------MSVFDMYRITLLIFVVCLCPFVFFNLAKTKFLQIATTIFRWAAFLCMVSLAVNRVVHKKSTHRAVIFEFNALPNFFGVAVYSFMCHHSLPSIITPVTNKRRILYVLFGDFVAVFFFYMLLVTTAVFAFKVDDLKDLYTLSFTDAPDV----LKYFLELFPTFTLSTNFPIIAITLRENLKNLFLKENKYYGLFVRRFLFPLAVIIPPIIIAFATDDVEMLVSITGTYAGAVIQYVVPVMLVFYGRRSVLAKLGNYI-NKNRSPFRSQGWVYLIVTWYFVCTVFVTVN 470
            Y+  +  VY+FNLIVG GALTMP+AFA  GW++  V +  L  MSF T+TF+IEAM+  NA +   R++N K++ +  S T  D D    +  E AE  P+L +     S + + I  +VEMG +A MFF+K G+  +Y  I +YLYGDLAIYAAAVP S+ Q  C         G+  CG  +             +   D YRI L IF + L PF FF++ KTK+LQI T++ RW AF  M+ LA+ R+ H +      + +F+ + N FGV VYSFMC HSLPS+ITPV++KR +  ++F D+V +  FY LL  TA+F F+ D L D+YTL+F     V    +++FL LFP FT+STNFPIIA+TLR N K LF +E   Y   V R +FP   ++PP+++AF T D+E LV ITG YAG  IQYV+P  LV++ RR      G  + NK+RSPFR   WV  ++ W F C +FVT N
Sbjct:   12 YSSYVGLVYMFNLIVGTGALTMPKAFATAGWLVSLVLLVFLGFMSFVTTTFVIEAMAAANAQLHWKRMENLKEEEDDDSSTASDSDVLIRDNYERAEKRPIL-SVQRRGSPNPFEITDRVEMGQMASMFFNKVGVNLFYFCIIVYLYGDLAIYAAAVPFSLMQVTCSA------TGNDSCGVEADTKYNDTDRCWGPLRRVDAYRIYLAIFTLLLGPFTFFDVQKTKYLQILTSLMRWIAFAVMIVLALIRIGHGQGEGHPPLADFSGVRNLFGVCVYSFMCQHSLPSLITPVSSKRHLTRLVFLDYVLILAFYGLLSFTAIFCFRGDSLMDMYTLNFARCDVVGLAAVRFFLGLFPVFTISTNFPIIAVTLRNNWKTLFHREGGTYPWVVDRVVFPTITLVPPVLVAFCTHDLESLVGITGAYAGTGIQYVIPAFLVYHCRRDTQLAFGCGVSNKHRSPFRHTFWVGFVLLWAFSCFIFVTAN 488
The following BLAST results are available for this feature:
BLAST of TCONS_00062623-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM1041.514e-12845.04Transmembrane protein 104 OS=Homo sapiens GN=TMEM1... [more]
back to top