TCONS_00062911-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062911-protein
Unique Name	TCONS_00062911-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	265

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062911-protein ID=TCONS_00062911-protein|Name=TCONS_00062911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MADKDVTNISCDLDTEWVEKNYQSSWKDRFEEDGFLVIRDLIQDERVVKS
YIKSYEELLDSSETTDHRFDLGSHKEEQNNERKKENICQIMWPSMYDGTF
LERPIFKRLLTVVRKILGEDMDFDFDMLINKFPYSGTPTPWHQDESYWPD
MPDKRAVSCWVALDDATVENGCMWFVRGSHQEEALRPHRRVKEGHHARCT
DSCSEREGQPQPLKRGSCTLHHGRTLHYTRGNNTGTNRRAYIMNFRPKEM
VQWERDRGFDHGKTK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039401	XLOC_039401	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062911	TCONS_00062911	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008775	Phytyl_CoA_dOase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.120.620		coord: 7..259 e-value: 5.3E-40 score: 136.8
None	No IPR available	SUPERFAMILY	51197	Clavaminate synthase-like	coord: 25..254
IPR008775	Phytanoyl-CoA dioxygenase	PFAM	PF05721	PhyH	coord: 30..240 e-value: 2.2E-37 score: 129.3

Blast

[Close]

BLAST of TCONS_00062911-protein vs. Swiss-Prot (Human)
Match: PHYD1 (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.165e-19
Identity = 69/266 (25.94%), Postives = 110/266 (41.35%), Query Frame = 0

Query:   25 SWKDRFEEDGFLVIRDLIQDERVVKSYIKSYEELLDSSETTDHRFDLGSHKEEQNNERKK--------ENICQIMWPSMYD--GTFL----------------ERPIFKRL-----LTVVRKILGEDMDFDF-DMLINKFPYSGTPTPWHQDESYWPDMPDKRAVSCWVALDDATVENGCMWFVRGSHQEEALRPHRRVKEGHHARCTDSCSE--REGQ---PQPLKRGSCTLHHGRTLHYTRGNNTGTNRRAYIMNFRPKEMVQW 253
            S   +F++DGFLV+   +  E  V    +  E + +       R +  + +EEQ   +          + I       ++D  G FL                  P+FK +     +  + + LG  M      M I K P+ G     HQD S+    P  R +  W+A++DAT+ENGC+WF+ GSH     R   R   G     +   SE  R+     P P++RG+  L HG  +H ++ N +  +R+AY  +        W
Sbjct:    7 SQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTW 272

The following BLAST results are available for this feature:

BLAST of TCONS_00062911-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062911-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PHYD1	2.165e-19	25.94	Phytanoyl-CoA dioxygenase domain-containing protei...	[more]

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TCONS_00062911-protein (polypeptide) - C. hemisphaerica