TCONS_00062959-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00062959-protein
Unique Name	TCONS_00062959-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	593

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00062959-protein ID=TCONS_00062959-protein|Name=TCONS_00062959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp
MAEVKFSAANDAAEVKLESKNKNGGEMNLEEDDNKQPERRQWGNKFEFLL
SCIGYAVGLGNIWRFPWLAKKNGGGAFLIPYFTMLILEGIPVFYLEMNIG
QRFRLGPGPVWQKISPWAGGVGLCTLAASFLSGCFYRMPFGWIIYYFFTS
MQNPLPWSSCPQVSDGNSTMVDLPKCKKIGSTEYYWYYTALQISSSIEDN
TGLSWQLVLSLFGCYTIITACMIKGIESAGKVVYFTALFPYVCLLIFLIQ
GLTLEGYEEGLYYLFRPEWDRLKDPIVWKDAAAQIFFSLSLGFGGIIAYA
SYNDEKNDTLKDTLIICFVNCFTSIFAGCAIFSILGYRATTKSKNCILEN
LLNSSNMWHNCSVDYFLDQTSGGSGLAFVAFTEAIDLLPGSIFFAILFFL
MLVTLGLDSAFGSLEGVLTSVIDMKIFPKLRDEWKMVTIALIMFIPGIAF
CTSIGEYLIQLFSDFGIDFPIIIVAFAELMFVSYAYGLDKFGEDIEHMTG
RNISLFFKICWKYVSPALIAIVLGFTFYGMVSKPPQYTAWDTEQALSVKK
DYPGWALFVGVTCTLLTFICIPGYALWVVYKRRYKGEKHTINY

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039435	XLOC_039435	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00062959	TCONS_00062959	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000175	Na/ntran_symport

Vocabulary: **Molecular Function**
Term	Definition
GO:0005328	neurotransmitter:sodium symporter activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006836	neurotransmitter transport

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006836	neurotransmitter transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005328	neurotransmitter:sodium symporter activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000175	Sodium:neurotransmitter symporter	PRINTS	PR00176	NANEUSMPORT	coord: 388..407 score: 55.9 coord: 468..488 score: 26.85 coord: 232..249 score: 60.11 coord: 508..528 score: 30.76 coord: 47..68 score: 68.78 coord: 314..334 score: 48.09 coord: 76..95 score: 57.7 coord: 120..146 score: 29.08
IPR000175	Sodium:neurotransmitter symporter	PFAM	PF00209	SNF	coord: 39..578 e-value: 9.5E-166 score: 552.4
IPR000175	Sodium:neurotransmitter symporter	PROSITE	PS50267	NA_NEUROTRAN_SYMP_3	coord: 38..584 score: 85.917
None	No IPR available	SUPERFAMILY	161070	SNF-like	coord: 39..580

Blast

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BLAST of TCONS_00062959-protein vs. Swiss-Prot (Human)
Match: S6A19 (Sodium-dependent neutral amino acid transporter B(0)AT1 OS=Homo sapiens GN=SLC6A19 PE=1 SV=1)

HSP 1 Score: 440.269 bits (1131), Expect = 8.861e-148
Identity = 229/603 (37.98%), Postives = 351/603 (58.21%), Query Frame = 0

Query:   17 LESKNKNGGEMNLEEDDNKQPERRQWGNKFEFLLSCIGYAVGLGNIWRFPWLAKKNGGGAFLIPYFTMLILEGIPVFYLEMNIGQRFRLGPGPVWQKISPWAGGVGLCTLAASFLSGCFYRMPFGWIIYYFFTSMQNPLPWSSCPQVSDGNSTMVDLPKCKKIGSTEYYWYYTALQISSSIEDNTGLSWQLVLSLFGCYTIITACMIKGIESAGKVVYFTALFPYVCLLIFLIQGLTLEGYEEGLYYLFRPEWDRLKDPIVWKDAAAQIFFSLSLGFGGIIAYASYNDEKNDTLKDTLIICFVNCFTSIFAGCAIFSILGYRATTKSKNCILENLL-------------------------NSSN-------MWHNCSVDYFLDQTSGGSGLAFVAFTEAIDLLPGSIFFAILFFLMLVTLGLDSAFGSLEGVLTSVIDMKIF-PKLRDEWKMVTIALIMFIPGIAFCTSIGEYLIQLFSDFGIDFPIIIVAFAELMFVSYAYGLDKFGEDIEHMTGRNISLFFKICWKYVSPALIAIVLGFTFYGMVSKPPQYTAWD---TEQALSVKKDYPGWALFVGVTCTLLTFICIPGYALWVVYKRR 583
            L+++  +  E+   E +     R +W NK +++L+C+G+ VGLGN+WRFP+L + +GGGAF+IP+  +L+LEGIP+ YLE  IGQR R G   VW  I P   G+GL ++  SF+ G +Y     WI++Y F S Q PLPWS CP +++  +  VD  +C +    +Y+WY   L IS+SI D+  + W ++L L   ++++  C I+GIE+ GK VY T+  PYV L IFLI+GLTL+G   G+ +LF P    L  P  W DA AQ+FFS SL FGG+I+++SYN   N+  KD++I+  +N FTS++    ++S++G+RAT +  +C   N+L                         N+S+       ++  C ++ FL +   G+GLAF+ FTEAI  +P S  +++LFF+ML  LGL S FG++EGV+  + D+++  PK   E     I L  F+ G  F  + G+Y + L   +    P++I+AF E+  V Y YG+D+F +DIE M G   ++F+++ W+ VSP L+ I+  F F   VS+   Y+ WD    E   S K  YP W   V V    +  + IPGYA++ + +  
Sbjct:   11 LDARIPSLAELETIEQEEAS-SRPKWDNKAQYMLTCLGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIPLLYLEFAIGQRLRRGSLGVWSSIHPALKGLGLASMLTSFMVGLYYNTIISWIMWYLFNSFQEPLPWSDCP-LNENQTGYVD--ECARSSPVDYFWYRETLNISTSISDSGSIQWWMLLCLACAWSVLYMCTIRGIETTGKAVYITSTLPYVVLTIFLIRGLTLKGATNGIVFLFTPNVTELAQPDTWLDAGAQVFFSFSLAFGGLISFSSYNSVHNNCEKDSVIVSIINGFTSVYVAIVVYSVIGFRATQRYDDCFSTNILTLINGFDLPEGNVTQENFVDMQQRCNASDPAAYAQLVFQTCDINAFLSEAVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVVVPLQDLRVIPPKWPKEVLTGLICLGTFLIGFIFTLNSGQYWLSLLDSYAGSIPLLIIAFCEMFSVVYVYGVDRFNKDIEFMIGHKPNIFWQVTWRVVSPLLMLIIFLFFFVVEVSQELTYSIWDPGYEEFPKSQKISYPNWVYVVVVIVAGVPSLTIPGYAIYKLIRNH 609

The following BLAST results are available for this feature:

BLAST of TCONS_00062959-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00062959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
S6A19	8.861e-148	37.98	Sodium-dependent neutral amino acid transporter B(...	[more]

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TCONS_00062959-protein (polypeptide) - C. hemisphaerica