TCONS_00062961-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062961-protein
Unique NameTCONS_00062961-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062961-protein ID=TCONS_00062961-protein|Name=TCONS_00062961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=506bp
MEGQLDESQHLLEDDNQQPQTSSRRSYGLRIAAVATSQIEPQIMGEGEIR
KHQDVDDDGEGLDVVEPLPSKDGEQPETSKPNKKGLKLTLKVDAAAKHNM
QRHQWQQQQDLLTPSSKGTPKPMNVAVFLKEGEGHLLLLERGKITTAGEI
KMMMMEILSIPKTSSHVFALWFISPYLEIQLKDHHIPFLLRKQWSELLEE
FSFCKDEDDRSSDEPVLVFQRNSFLSLADEEKQSHKLVIQRLFQEAKHNI
LTTRYPIPIPDAEILAGMIARVKLGPYNAEVHKAGFFKKTLSEYLPYYAI
GSNKFLQLLRQSSSEQHLLQQYERATNKSHDSLSCQLEFLKYCRSLSFYG
CAFFKGSAIQDGIEMKPWKSCEKDVIVGINRLGITLFNGSKEEVLIHLPY
DDLSWEFIRSKDVGNKEEEQSKGEDIFCIEYDTIHDGEQNSEQIQILSNQ
ACMMDAMVTSCINFMNVMKIPKTPTSADYKKILDISYSTMPSSKKHNFSL
TRPFKR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039437XLOC_039437Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062961TCONS_00062961Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019749Band_41_domain
IPR019748FERM_central
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR011993PH_dom-like
IPR000299FERM_domain
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019749Band 4.1 domainSMARTSM00295B41_5coord: 119..354
e-value: 1.9E-7
score: 40.7
NoneNo IPR availableGENE3D3.10.20.90coord: 123..225
e-value: 0.003
score: 17.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..85
IPR019748FERM central domainPFAMPF00373FERM_Mcoord: 232..354
e-value: 5.7E-11
score: 42.8
IPR019748FERM central domainCDDcd14473FERM_B-lobecoord: 242..346
e-value: 1.29654E-8
score: 51.4782
IPR019748FERM central domainSUPERFAMILY47031Second domain of FERMcoord: 234..349
IPR014352FERM/acyl-CoA-binding protein, 3-helical bundleGENE3D1.20.80.10coord: 227..346
e-value: 8.7E-10
score: 38.4
IPR011993PH domain-likeGENE3D2.30.29.30coord: 349..469
e-value: 1.8E-12
score: 47.0
IPR000299FERM domainPROSITEPS50057FERM_3coord: 123..469
score: 25.776

Blast
[Close]
BLAST of TCONS_00062961-protein vs. Swiss-Prot (Human)
Match: FRMD8 (FERM domain-containing protein 8 OS=Homo sapiens GN=FRMD8 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.259e-49
Identity = 122/387 (31.52%), Postives = 186/387 (48.06%), Query Frame = 0 
Query:  121 KPMNVAVFLKEGEGHLLLLERGKITTAGEIKMMMMEILSIPKTSSHVFALWFISPYLEIQLKDHHIPFLLRKQWSELLEEFSFCKDEDDRSSDEPVLVFQRNSFLSLADEEKQSHKLVIQRLFQEAKHNILTTRYPIPIPDAEILAGMIARVKLGPYNAEVHKAGFFKKTLSEYLPYYAI--GSNKFLQL----LRQSSSEQHLLQQYERATNKSHDSLSCQL-------EFLKYCRSLSFYGCAFFKGSAIQDGIEMKPWKSCEKDVIVGINRLGITLFNGSKEEVLIHLPYDDLSWEFIRSKDVGNKEEEQSKGEDIFCIEYDTIHDGEQNSEQIQILSNQACMMDAMVTSCINFMNVMKIPKTPTSADYKKILDISYSTMPSSK 494
            +  +V V+L +     L +E     +A E+   + E+L +P  +  VFALW +SP LE+QLK  H P+ L +QW ELL  F+   D DD + DEP L F+RN F     E +   + V++ L++EAK N+L  RYP  + D E L  ++ RV+LGPY      A   ++ L  +LP +    G + F  L     R    EQ LL  Y +    S D   C+         +L  C  L FYGCAFF G  +    +    +   K V V I+  G+ + +  ++ VL+ L + +LSW      D  + EEE    E I  +E+D   +G   ++ ++I S QA +M +++  CI      + P  P  +      D S S  P  +
Sbjct:   28 RAADVLVYLADDTVVPLAVENLPSLSAHELHRAVREVLQLPDIALDVFALWLVSPLLEVQLKPKHQPYKLGRQWPELLLRFTSAPD-DDVAMDEPFLQFRRNVFFPKRRELQIHDEEVLRLLYEEAKGNVLAARYPCDVEDCEALGALVCRVQLGPYQPGRPAACDLREKLDSFLPAHLCKRGQSLFAALRGRGARAGPGEQGLLNAYRQVQEVSSDG-GCEAALGTHYRAYLLKCHELPFYGCAFFHGE-VDKPAQGFLHRGGRKPVSVAISLEGVHVIDSREKHVLLGLRFQELSW------DHTSPEEE----EPILWLEFDGDSEGTPVNKLLKIYSKQAELMSSLIEYCIELSQAAE-PAGPQDSATGSPSDPSSSLAPVQR 400
The following BLAST results are available for this feature:
BLAST of TCONS_00062961-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FRMD81.259e-4931.52FERM domain-containing protein 8 OS=Homo sapiens G... [more]
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