TCONS_00063049-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063049-protein
Unique NameTCONS_00063049-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063049-protein ID=TCONS_00063049-protein|Name=TCONS_00063049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=387bp
EMKDGFGTGFFITQHTELLRQHSNFKMALASGGKTMCAVTELEFPSHLDA
EISTLCIKQLNDEKIIVGHENGIYITSIGTTDSVNIVKSLEGLEVPSVFV
DENSDGNIFYAASESNVYKFDIRCPLQDVHCFKDNTDEINFITMNDKGFL
ASCDDSGECKIFDTRKGTLYRTLRKRHKNICSSAAFLTTRADDIVTGGLD
SQMIVWNHAVVRFIQDINTQEILQKLGDNSVNMFNPPMVNALSLSQDGRL
LASGLGNGSLQLFHVLKGKRALAPSLLINQHGSTGITSLDFIKTSYSYIL
ASGGNDMEINLWRLPPIATNAKGKQLIPENEMALEQDEIMKYQIYQTKLQ
TKINTLESMRLNSRDFLLVGDQTPVLKMIDVTDLLEI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039496XLOC_039496Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063049TCONS_00063049Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 219..264
e-value: 3.0
score: 13.9
coord: 166..207
e-value: 0.65
score: 18.2
coord: 273..313
e-value: 0.34
score: 19.9
coord: 125..163
e-value: 0.15
score: 21.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 161..380
e-value: 1.4E-20
score: 73.1
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 26..160
e-value: 1.1E-8
score: 34.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 132..322
score: 9.441
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 51..316

Blast
[Close]
BLAST of TCONS_00063049-protein vs. Swiss-Prot (Human)
Match: WDR53 (WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.707e-25
Identity = 67/208 (32.21%), Postives = 111/208 (53.37%), Query Frame = 0 
Query:  109 FYAASESNVYKFDIRCPLQDVHCFKDNTDEINFITMND-KGFLASCDDSGECKIFDTRKGTLYRTLRKRHKNICSSAAFLTTRADDIVTGGLDSQMIVWNHAVVR--FIQDINTQEILQKLGDNSV-NMFNPPMVNALSLSQDGRLLASGLGNGSLQLFHVLKGKRALAPSLLINQHGSTGITSLDFIKTSYSYILASGGNDMEINLW 312
             YA+    +   D+R     +  F  N +EIN +++N  +  LAS DDSG  KI D     + R+L KRH NICSS AF   R   +V+ GLD Q+++W+    R  +I ++   E  +  G  S   + NP + +++S++  G + + G  +G +++F V+  K      L    H ++G++ + F+    SY+L +GGND +I LW
Sbjct:   67 LYASHGETISVLDVRSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKILDLENKKVIRSL-KRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQEDETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVK--CEQELGFKGH-TSGVSQVCFLPE--SYLLLTGGNDGKITLW 268
The following BLAST results are available for this feature:
BLAST of TCONS_00063049-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR536.707e-2532.21WD repeat-containing protein 53 OS=Homo sapiens GN... [more]
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