TCONS_00063105-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063105-protein
Unique Name	TCONS_00063105-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	437

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063105-protein ID=TCONS_00063105-protein|Name=TCONS_00063105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp
MNLAANGSDPSGELLFVNFNQDRTSLAVGSRLGYKLFSLANIERLEEIHD
YDKGDVCIVERLFSSSLVALVSLSSPRKLKVCHFKKGTEICNYSYPNTIL
SVRLNRMRLLVVLEESLYIHNIRDMKVLHTIRDTPPNLAGLCALSDNSDN
CYIAYPGNNQIGEVQIFDGINLRAVTMIAAHDAPVAALTFNTNATLLATA
SEKGTVIRVFSIPEGVKLFEFRRGMKRCAQINSLSFSQDLMYLACSSNTE
TIHVFKLEAETDKEKSPSSNKEEQKDQSWMGYFGKALMTPASYLPSQMTE
VFSQGRAFAIAKLPNAGPRNTCTLATINKLPRILVASADGYLYIYNVDPA
EGQECTLLRQFPLIPNDDDSIPSNADGQGFSAGLAVSDQQRNTPSPQSAS
SPIRTPQTPDHFPTSSSEQNLRLSDDGEYPPLTVRNE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039525	XLOC_039525	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063105	TCONS_00063105	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 306..346 e-value: 130.0 score: 3.7 coord: 214..256 e-value: 1.7 score: 15.5 coord: 171..211 e-value: 0.029 score: 23.5
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 5..425 e-value: 8.4E-29 score: 100.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 368..437
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 11..259 coord: 305..349

Blast

[Close]

BLAST of TCONS_00063105-protein vs. Swiss-Prot (Human)
Match: WIPI2 (WD repeat domain phosphoinositide-interacting protein 2 OS=Homo sapiens GN=WIPI2 PE=1 SV=1)

HSP 1 Score: 516.538 bits (1329), Expect = 0.000e+0
Identity = 271/472 (57.42%), Postives = 330/472 (69.92%), Query Frame = 0

Query:    1 MNLAA-NGSDPSGELLFVNFNQDRT------------------SLAVGSRLGYKLFSLANIERLEEIHD-YDKGDVCIVERLFSSSLVALVSLSSPRKLKVCHFKKGTEICNYSYPNTILSVRLNRMRLLVVLEESLYIHNIRDMKVLHTIRDTPPNLAGLCALSDNSDNCYIAYPGNNQIGEVQIFDGINLRAVTMIAAHDAPVAALTFNTNATLLATASEKGTVIRVFSIPEGVKLFEFRRGMKRCAQINSLSFSQDLMYLACSSNTETIHVFKLEAETDKEKSPSSNKEEQKDQSWMGYFGKALMTPASYLPSQMTEVFSQGRAFAIAKLPNAGPRNTCTLATINKLPRILVASADGYLYIYNVDPAEGQECTLLRQFPL----------IPNDDDSIPSNADGQGFSAGLAVSDQQRNTPSPQSASSPIRTPQTPDHFPTSSS-----EQNLRLSDDGEYPPLTVRNE 437
            MNLA+ +G   +G+LLF NFNQD T                  SLAVGS+ GYK FSL+++++LE+I++  D  DVCIVERLFSSSLVA+VSL +PRKLKVCHFKKGTEICNYSY NTIL+V+LNR RL+V LEESLYIHNIRDMKVLHTIR+TPPN AGLCALS N+DNCY+AYPG+  IGEVQ+FD INLRA  MI AHD+P+AAL F+ + T LATASEKGTVIRVFSIPEG KLFEFRRG+KRC  I SL+FS D M+L+ SSNTET+H+FKL  ET KEK P      ++  +W GYFGK LM   SYLPSQ+TE+F+QGRAFA  +LP  G +N C+LATI K+PR+LV +ADGYLY+YN+DP EG EC L++Q  L          + +     P      G +AG       + T  P   SSP R   T D      +        LRL +D E+PP+ +R +
Sbjct:    1 MNLASQSGEAGAGQLLFANFNQDNTEVKGASRAAGLGRRAVVWSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFSSSLVAIVSLKAPRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYIHNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIPAHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMDGMFLSASSNTETVHIFKL--ETVKEKPP------EEPTTWTGYFGKVLMASTSYLPSQVTEMFNQGRAFATVRLPFCGHKNICSLATIQKIPRLLVGAADGYLYMYNLDPQEGGECALMKQHRLDGSLETTNEILDSASHDCPLVTQTYGAAAG-------KGTYVP---SSPTRLAYTDDLGAVGGACLEDEASALRLDEDSEHPPMILRTD 454

The following BLAST results are available for this feature:

BLAST of TCONS_00063105-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063105-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WIPI2	0.000e+0	57.42	WD repeat domain phosphoinositide-interacting prot...	[more]

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TCONS_00063105-protein (polypeptide) - C. hemisphaerica