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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00063108-protein ID=TCONS_00063108-protein|Name=TCONS_00063108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=865bp
MAASCPKEYGFDVKFAEKLDRDNIECTICFMVLREPLQGSKCGHRYCKKC
IEEFHEKNPKKCPQDWQENEWFKDLGKEREILDLKIRCKNHRDGCTWQNE
LRDQEEHLKTCDYETIQCNLRCGEPVLRINLQNHLDKDCPLISTCEYSDF
GCLFKGTRDQLYNHISRAINQHFSLEMKHEIRNLKQEFSDKLHEKDLKIQ
EITKEFDAQQKERDEKIQNLSEKFDCQLKEKDDEIKRLREDVDGAKKDLQ
RASNENNENHKAIEETKKDFIGVVNEIKTEQEKAIQETKKDFNRVVNQTK
IEQQKAIEETKKDATRVIDETKIEQQKAIEETKKDVTRVIDETKIEQQKA
IEETKKDITRVIDETKIEQQKAIEETKKDVTRVIDETKIEQQKAIAETKK
DFTRVIDETKTEQQKAIEETKKDFTRVIDETKTEQQTAIEETKKDFTRVI
DETKIEQQKAIAETKKDFTRVIDETKTEQQTAIEETKKDFTRVIDETKIE
QQKAIAETKKDFNRAIDETKTEQQKAIEETKKDVTRVIDETNTEQQKAIE
ETKKDFTQVIDETKTEQQKAIEETKKDFNRAIDETKIEQQKASEETKKDF
TRVTNQTKTEQQKAMEEIKNNFTRVVNEIKTEQEKAIEETKKDFNRVVNQ
TKTEQQKAIEETKKDFTRVVNETKTEQQKALNKSMEIISMMLYITDKNTH
EFINGSLRERSDHVHNLNKKLAEENKLTLQILSLPQCPYSFTIENFKFQF
EEAKKTNKRTSSPNFLTVNGYLGRLNIYLNGYRSAQDNHVSVFFQNLKGP
YDNFLKWPIPWKSHSMTLLVNNREIGKKSSQNSDDGGKWKDNFIRPIGDE
GWFHSLNHLWKGPEK Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 185..219 |
| None | No IPR available | COILS | Coil | Coil | coord: 615..635 |
| None | No IPR available | COILS | Coil | Coil | coord: 509..529 |
| None | No IPR available | COILS | Coil | Coil | coord: 564..595 |
| None | No IPR available | COILS | Coil | Coil | coord: 221..269 |
| None | No IPR available | COILS | Coil | Coil | coord: 311..331 |
| None | No IPR available | GENE3D | 1.20.5.1230 | | coord: 482..680
e-value: 3.1E-8
score: 33.2 |
| None | No IPR available | PFAM | PF13923 | zf-C3HC4_2 | coord: 25..64
e-value: 1.6E-7
score: 30.9 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 588..611 |
| None | No IPR available | PRODOM | PD968187 | | coord: 190..688
e-value: 6.0E-8
score: 143.0 |
| None | No IPR available | SUPERFAMILY | 58113 | Apolipoprotein A-I | coord: 527..683 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 21..67 |
| IPR001841 | Zinc finger, RING-type | SMART | SM00184 | ring_2 | coord: 26..65
e-value: 1.9E-4
score: 30.8 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 26..65
score: 10.778 |
| IPR001841 | Zinc finger, RING-type | CDD | cd00162 | RING | coord: 25..63
e-value: 8.31613E-10
score: 54.7592 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 139..168
e-value: 0.067
score: 12.9
coord: 82..135
e-value: 5.0E-13
score: 48.5 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 21..81
e-value: 4.3E-9
score: 35.4 |
| IPR001293 | Zinc finger, TRAF-type | PFAM | PF02176 | zf-TRAF | coord: 107..164
e-value: 7.2E-10
score: 39.3 |
| IPR001293 | Zinc finger, TRAF-type | PROSITE | PS50145 | ZF_TRAF | coord: 107..161
score: 10.286 |
| IPR008974 | TRAF-like | GENE3D | 2.60.210.10 | | coord: 718..862
e-value: 3.6E-14
score: 52.5 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 739..820 |
| IPR008974 | TRAF-like | SUPERFAMILY | 49599 | TRAF domain-like | coord: 84..156 |
| IPR017907 | Zinc finger, RING-type, conserved site | PROSITE | PS00518 | ZF_RING_1 | coord: 42..51 |
Blast
BLAST of TCONS_00063108-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 3.734e-25 Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 0
Query: 10 GFDVKFAEKLDRDNIECTICFMVLREPLQGSKCGHRYCKKCIEEFHEKNPKKCPQDWQENEW---FKDLGKEREILDLKIRCKNHRDGCTWQNELRDQEEHLKTCDYETIQCNLRCGEPVLRINLQNHLDKDCPLIST-CEYSDFGCLFKG 156
GFD KF EK R + C +C +REP+Q S CGHR+C C++EF + KCP+D ++ + D E ++L L IRC + +GC W LR + HL TC + I C RC + R +L HL DCP CE+ GC F G
Sbjct: 3 GFDYKFLEKPKR-RLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNRCPMKLSRRDLPAHLQHDCPKRRLKCEFC--GCDFSG 150
The following BLAST results are available for this feature:
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