TCONS_00063203-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063203-protein
Unique NameTCONS_00063203-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063203-protein ID=TCONS_00063203-protein|Name=TCONS_00063203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=717bp
MSNANRYNVNDASEPPTTLNPINTRITKNKSFAISADASNSAPAILTAHN
SIASGLLSIANFTQTPSQYINKVFLGTRDINQHRRLSINVLQSNLTRRNT
IQRRVRSWIAPANTSANVKIFGGKRAVQIEQQRSKAAGWVIHPYSSLRYY
WDLIIMLVLLFNMLVLPLNVAFFSESNTSFVTWIVVHTFSDIVFMLDIVF
NFRTGYRKDEPGHFISFVLQPKKIAKNYFKSWFLIDLISSFPFDNIILLI
SGGNTDSYGLGVKSAFRGFKFLRLVKLLSLLKLLRLSRVMRYVSKYEDFY
NLTASVIRYIKLVCMMLMVAHWNGCLGFLVPMLQDFPVDSWVALNNLQEA
HWTEQYGWALFKALSHMLCIGYGRFIPRLLSEACITIFSMVTGATFYALF
IAHSMAYIQQRDSARRLYSEKFQQIEEYMRYRDLPQNVREKITDYYEHKY
SQKRLFNELEILSEVSKPLRDDIVNHNCRDLIECVPFLREGGPDFITQVT
NSLTFDVYLAGDIIIKEGTFGDEMFFIRNGSVDVIASGQYVTTLVEGDYF
GEITMLTSARRVATITAVTVCDLFILTADNLNKTLEEFPEMRAVMEKVAL
NRLLRLREKLPECTNTHSATVDLKKKPRFESASSCTTRNMSTIINEATDI
ISKSTTNIANPKNNQVSPAPHNFPAVPTINVSGSNGNIAVNKDTPDKQET
GELSNTESSKKDPHVVV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039598XLOC_039598Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063203TCONS_00063203Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000595cNMP-bd_dom
IPR005821Ion_trans_dom
IPR013621Ion_trans_N
IPR014710RmlC-like_jellyroll
IPR018488cNMP-bd_CS
IPR018490cNMP-bd-like
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000595Cyclic nucleotide-binding domainSMARTSM00100cnmp_10coord: 487..603
e-value: 5.6E-19
score: 79.1
IPR000595Cyclic nucleotide-binding domainPFAMPF00027cNMP_bindingcoord: 507..586
e-value: 3.5E-15
score: 55.7
IPR000595Cyclic nucleotide-binding domainPROSITEPS50042CNMP_BINDING_3coord: 487..602
score: 23.756
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 149..412
e-value: 1.9E-22
score: 79.6
NoneNo IPR availableGENE3D1.20.120.350coord: 148..303
e-value: 1.8E-13
score: 49.8
NoneNo IPR availableGENE3D1.10.287.630coord: 414..466
e-value: 2.3E-22
score: 78.6
NoneNo IPR availableGENE3D1.10.287.70coord: 304..413
e-value: 1.0E-11
score: 43.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 658..717
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableCDDcd00038CAP_EDcoord: 493..595
e-value: 3.25707E-21
score: 89.3073
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 142..411
IPR013621Ion transport N-terminalPFAMPF08412Ion_trans_Ncoord: 106..146
e-value: 2.6E-11
score: 42.8
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10coord: 467..610
e-value: 4.5E-31
score: 107.0
IPR018488Cyclic nucleotide-binding, conserved sitePROSITEPS00888CNMP_BINDING_1coord: 514..530
IPR018490Cyclic nucleotide-binding-likeSUPERFAMILY51206cAMP-binding domain-likecoord: 413..603

Blast
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BLAST of TCONS_00063203-protein vs. Swiss-Prot (Human)
Match: HCN1 (Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Homo sapiens GN=HCN1 PE=1 SV=3)

HSP 1 Score: 479.559 bits (1233), Expect = 4.942e-158
Identity = 235/515 (45.63%), Postives = 351/515 (68.16%), Query Frame = 0 
Query:  101 IQRRVRSWIAPANTSANVKIFGGKRAVQIEQQRSKAAG-WVIHPYSSLRYYWDLIIMLVLLFNMLVLPLNVAFFSESNTSFVTWIVVHTFSDIVFMLDIVFNFRTGYRKDEPGHFISFVLQPKKIAKNYFKSWFLIDLISSFPFDNIILLISGG-NTDSYGLGVKSAFRGFKFLRLVKLLSLLKLLRLSRVMRYVSKYEDF----YNLTASVIRYIKLVCMMLMVAHWNGCLGFLVPMLQDFPVDSWVALNNLQEAHWTEQYGWALFKALSHMLCIGYGRFIPRLLSEACITIFSMVTGATFYALFIAHSMAYIQQRDSARRLYSEKFQQIEEYMRYRDLPQNVREKITDYYEHKYSQKRLFNELEILSEVSKPLRDDIVNHNCRDLIECVPFLREGGPDFITQVTNSLTFDVYLAGDIIIKEGTFGDEMFFIRNGSVDVIASGQYVTTLVEGDYFGEITMLTSARRVATITAVTVCDLFILTADNLNKTLEEFPEMRAVMEKVALNRLLRLREK 609
            +QR+  S + P     ++++FG ++AV+ EQ+R K AG W+IHPYS  R+YWDLI++++++ N++++P+ + FF+E  T+   WI+ +  SD VF+LD++ NFRTG   ++    I   L PK I  NY KSWF++D ISS P D I L++  G +++ Y    K+A R  + +R  K+LSLL+LLRLSR++RY+ ++E+     Y+L ++V+R   L+ MML++ HW+GCL FLVP+LQDFP D WV+LN +    W +QY +ALFKA+SHMLCIGYG   P  +S+  IT+ SM+ GAT YA+F+ H+ A IQ  DS+RR Y EK++Q+E+YM +  LP ++R+KI DYYEH+Y Q ++F+E  IL+E++ PLR++IVN NCR L+  +P      P+F+T + + L F+V+  GD II+EG  G +M+FI++G   VI        L +G YFGEI +LT  RR A++ A T C L+ L+ DN N+ LEE+P MR   E VA++RL R+ +K
Sbjct:   94 MQRQFTSMLQPGVNKFSLRMFGSQKAVEKEQERVKTAGFWIIHPYSDFRFYWDLIMLIMMVGNLVIIPVGITFFTEQTTT--PWIIFNVASDTVFLLDLIMNFRTGTVNEDSSEII---LDPKVIKMNYLKSWFVVDFISSIPVDYIFLIVEKGMDSEVY----KTA-RALRIVRFTKILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIFNLIGMMLLLCHWDGCLQFLVPLLQDFPPDCWVSLNEMVNDSWGKQYSYALFKAMSHMLCIGYGAQAPVSMSDLWITMLSMIVGATCYAMFVGHATALIQSLDSSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRY-QGKIFDEENILNELNDPLREEIVNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGVAGVITKSSKEMKLTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRLDRIGKK 597
The following BLAST results are available for this feature:
BLAST of TCONS_00063203-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HCN14.942e-15845.63Potassium/sodium hyperpolarization-activated cycli... [more]
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