TCONS_00063275-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063275-protein
Unique NameTCONS_00063275-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length458

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063275-protein ID=TCONS_00063275-protein|Name=TCONS_00063275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MDDLDELLDGLTEEELLAIDAEFDPNDEFIEASSRKLEEKKEREFEKRDV
VETLENMLRQKHSLSVTPKSKDSSATSTSKPTIPWSQRNKTESTPNSAVN
SLTTNSARDSSVLYSSSVSSMKSEGSENSSSSKWILSEEEDEVFSQLTEE
ELLEIAELADRHPILTQERSKSVDSKPSKLPRDFDPIKGLERRMMSMSDD
DADLDSTLLLDCLRNDSEEIYHVRINNITLEKAILLAIFDTLKTTKTMRH
LSLAGIHFKDEEGLLFNEAMKENTTIETLNLESNELTNICIEPLCEILET
HPAIREFKCSHQKHGLGSRGEEAMARALNKNERLLKISYPFKVPSARSVA
DRCQIRNGEILRQKRTKGEDFYNYKEEIKQRDAHVQPWIKVQTVDKNEQM
KSDLADQRGRMKSVGSVSQMRAESKLRARENAKPTMDNELASKLSAARKS
RGRSIKAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039653XLOC_039653Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063275TCONS_00063275Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675L_dom-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 173..417
e-value: 4.3E-16
score: 57.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..185
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 399..458
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 213..366

Blast
[Close]
BLAST of TCONS_00063275-protein vs. Swiss-Prot (Human)
Match: LMOD3 (Leiomodin-3 OS=Homo sapiens GN=LMOD3 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.889e-16
Identity = 49/161 (30.43%), Postives = 81/161 (50.31%), Query Frame = 0 
Query:  198 SDDDADLDSTLLLDCLRNDSEEIYHVRINNI-TLEKAILLAIFDTLKTTKTMRHLSLAGIHFKDEEGLLFNEAMKENTTIETLNLESNELTNICIEPLCEILETHPAIREFKCSHQKHGLGSRGEEAMARALNKNERLLKISYPFKVPSARSVADRCQIRN 357
            S +  DLD +L    +R +  ++  + +NNI  + K +LL   + +K  K ++  SLA +   +         ++EN +I TLN+ESN +T   I  +   L+ +  + E +  +Q+H LG   E  +AR L  N  LLK+ Y F++P  R V      RN
Sbjct:  235 SGNQTDLDGSL--RRVRKNDPDMKELNLNNIENIPKEMLLDFVNAMKKNKHIKTFSLANVGADENVAFALANMLRENRSITTLNIESNFITGKGIVAIMRCLQFNETLTELRFHNQRHMLGHHAEMEIARLLKANNTLLKMGYHFELPGPRMVVTNLLTRN 393
The following BLAST results are available for this feature:
BLAST of TCONS_00063275-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMOD34.889e-1630.43Leiomodin-3 OS=Homo sapiens GN=LMOD3 PE=1 SV=1[more]
back to top