USF (polypeptide) - C. hemisphaerica

Overview
NameUSF
Unique NameTCONS_00063315-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063315-protein ID=TCONS_00063315-protein|Name=USF|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MTTLFEEADNTDPPSPSELLDAPSIKSELVGQRKASNGASQSDDGINSGG
SPAGASQEGTTSDSFTTFVGDGNSISNNVRVVHVQAVDDNPNPNSSGSVN
SSNSGGLYAVGGGGQIQQVISPGDSAIGSVGVDSASQDGARYTYYPAVQT
NENNQGGQFYVMMSPQEVIPVTGGNSAPRIIAPRAQTLSTKSESSRSTRD
ERRRATHNEVERRRRDKINTWIMKIAAVVPDCQMDQSKQGTSKGGVLSKA
LDHIVKLRQENDRMRENMKEQERVLVENQVLRQQVEKLRQENSILQANLN
LHMRQGEQMEDDGKLDED
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039668XLOC_039668Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063315TCONS_00063315Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046983 protein dimerization activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 247..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..212
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 208..263
e-value: 1.1E-10
score: 51.5
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 203..257
e-value: 1.1E-13
score: 50.7
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3D4.10.280.10coord: 201..274
e-value: 6.4E-19
score: 67.3
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 202..257
score: 14.278
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainCDDcd00083HLHcoord: 200..261
e-value: 9.71794E-12
score: 58.3795
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSUPERFAMILY47459HLH, helix-loop-helix DNA-binding domaincoord: 193..269

Blast
[Close]
BLAST of USF vs. Swiss-Prot (Human)
Match: USF2 (Upstream stimulatory factor 2 OS=Homo sapiens GN=USF2 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.466e-57
Identity = 92/175 (52.57%), Postives = 123/175 (70.29%), Query Frame = 0 
Query:  140 ARYTYYPA----------VQTNENN--QGGQFYVMMSPQEVIPVTGGNSAPRIIAPRAQTLSTKSESSRSTRDERRRATHNEVERRRRDKINTWIMKIAAVVPDCQMDQSKQGTSKGGVLSKALDHIVKLRQENDRMRENMKEQERVLVENQVLRQQVEKLRQENSILQANLNLH 302
            AR+ Y+PA          VQT + +   GGQFYVMM+PQ+V+  TG     R IAPR    S K + +R+ RDERRRA HNEVERRRRDKIN WI++++ ++PDC  D SK G SKGG+LSKA D+I +LRQ N RM+E  KE ER+ ++N++LRQQ+E+L+ EN++L+A L  H
Sbjct:  165 ARFAYFPASSVGDTTAVSVQTTDQSLQAGGQFYVMMTPQDVLQ-TGTQ---RTIAPRTHPYSPKIDGTRTPRDERRRAQHNEVERRRRDKINNWIVQLSKIIPDCNADNSKTGASKGGILSKACDYIRELRQTNQRMQETFKEAERLQMDNELLRQQIEELKNENALLRAQLQQH 335
The following BLAST results are available for this feature:
BLAST of USF vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USF26.466e-5752.57Upstream stimulatory factor 2 OS=Homo sapiens GN=U... [more]
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