TCONS_00063366-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00063366-protein
Unique NameTCONS_00063366-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length578

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00063366-protein ID=TCONS_00063366-protein|Name=TCONS_00063366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
MYDSLPSSFGKRYDRDDRRGGGGRGGYGGGYGGGRGGGRGGGGGGKFKDN
QAGASLRKPRWNMDSLPRFDKNFYREHPNVQARSMEAVEEYRKARDITVA
GRNCPKPCQSFEETNLPDYVAETIKRMNFNEPTPIQAQGFSVALSGRDSV
GIAQTGSGKTISFMLPACVHIHHQEPLRSGDGPICLVLCPTRELAIQCQT
VAGEFGKSSRIRSTCIYGGASKGPQIRDLERGSEIVVATPGRLIDLLEMR
KLTLGRVTYMVLDEADRMLDMGFEPQIRKIFDQIRPDRQVLMWSATWPKE
VRKLAEDFLKDYVQINIGNINIHANHNILQIVDVCQEYEKENKLVKLLEE
IMGEKENKTIIFCETKRKTDDITRRLRRDGWPAMCIHGDKSQPEREWVLK
EFRSGKSPILLATDVASRGLDIPDINFVVNVDYPNNGEDYIHRIGRTARA
NRTGTAYTFFTQNNGKNAAELVSVMQEANQVVPPKLQDLAKGHYGGRKRV
RYSSESDDHGGKRFAGGSRSGGGSRSGGSSRGYGGSSGGSSRGGSSRGGS
YGGGSSYQNGGGSSGGGQNWNNGGFAQF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039705XLOC_039705Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00063366TCONS_00063366Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
IPR011545DEAD/DEAH_box_helicase_dom
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 338..358
NoneNo IPR availableGENE3D3.40.50.300coord: 334..488
e-value: 9.4E-53
score: 177.7
NoneNo IPR availableGENE3D3.40.50.300coord: 71..333
e-value: 2.8E-64
score: 216.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 484..578
NoneNo IPR availableCDDcd00079HELICccoord: 327..459
e-value: 2.4167E-43
score: 150.466
NoneNo IPR availableCDDcd00268DEADccoord: 111..316
e-value: 1.08246E-102
score: 310.571
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 370..451
e-value: 1.1E-33
score: 127.9
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 343..451
e-value: 1.4E-30
score: 105.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 343..490
score: 25.88
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 128..331
e-value: 1.9E-64
score: 230.1
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 140..315
score: 29.692
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 133..304
e-value: 4.5E-47
score: 160.0
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 261..269
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 109..137
score: 11.544
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 181..464

Blast
[Close]
BLAST of TCONS_00063366-protein vs. Swiss-Prot (Human)
Match: DDX5 (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 662.529 bits (1708), Expect = 0.000e+0
Identity = 326/533 (61.16%), Postives = 395/533 (74.11%), Query Frame = 0 
Query:   30 GYGGGR-GGGRGGGGGGKFKDNQAGASLRKPRWNMDSLPRFDKNFYREHPNVQARSMEAVEEYRKARDITVAGRNCPKPCQSFEETNLPDYVAETIKRMNFNEPTPIQAQGFSVALSGRDSVGIAQTGSGKTISFMLPACVHIHHQEPLRSGDGPICLVLCPTRELAIQCQTVAGEFGKSSRIRSTCIYGGASKGPQIRDLERGSEIVVATPGRLIDLLEMRKLTLGRVTYMVLDEADRMLDMGFEPQIRKIFDQIRPDRQVLMWSATWPKEVRKLAEDFLKDYVQINIGNINIHANHNILQIVDVCQEYEKENKLVKLLEEIMGEKENKTIIFCETKRKTDDITRRLRRDGWPAMCIHGDKSQPEREWVLKEFRSGKSPILLATDVASRGLDIPDINFVVNVDYPNNGEDYIHRIGRTARANRTGTAYTFFTQNNGKNAAELVSVMQEANQVVPPKLQDLAKGHYGGRKRVRYSSESDDHGGKRFAGGSRSGGGSRSGGSSRGYGGSS------GGSSRGGSSRGGSYGGGS 555
            G+G  R GG R G   GK K    G  L K +WN+D LP+F+KNFY+EHP++  R+ + VE YR++++ITV G NCPKP  +F E N P  V + I R NF EPT IQAQG+ VALSG D VG+AQTGSGKT+S++LPA VHI+HQ  L  GDGPICLVL PTRELA Q Q VA E+ ++ R++STCIYGGA KGPQIRDLERG EI +ATPGRLID LE  K  L R TY+VLDEADRMLDMGFEPQIRKI DQIRPDRQ LMWSATWPKEVR+LAEDFLKDY+ INIG + + ANHNILQIVDVC + EK+ KL++L+EEIM EKENKTI+F ETKR+ D++TR++RRDGWPAM IHGDKSQ ER+WVL EF+ GK+PIL+ATDVASRGLD+ D+ FV+N DYPN+ EDYIHRIGRTAR+ +TGTAYTFFT NN K  ++L+SV++EANQ + PKL  L +    GR R R   + D     R++ G R G  +     +   G SS      G  ++ G     +Y  GS
Sbjct:   15 GFGAPRFGGSRAGPLSGK-KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGGMKDDRR--DRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANYTNGS 544
The following BLAST results are available for this feature:
BLAST of TCONS_00063366-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX50.000e+061.16Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]
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