TCONS_00063606-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063606-protein
Unique Name	TCONS_00063606-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	385

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063606-protein ID=TCONS_00063606-protein|Name=TCONS_00063606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=385bp
MFSKILTCSRIIHQLTSRNTFLLRSSVLSCSNCYTQSAQSQKNFQNKNFI
RNYSIGEYDKLWQAVSSGRGKGRTGKKKVAPKDVEGDFLGFGKANIEWPG
LTKPIDLQRKPKQKRRDYEEYNAQFERRKRQFDATQRGWSGTTWPGRHAG
APELPSGDAVKDFDSIVIEVKKVAVTRANGKRKRTSALVVVGNGKGSIGW
AIGKATFASAAIRKARNKAVNYLHYVPVTEEKSIYHNLQTKVNSTQINFE
KKVPGHGRRCQRIVRAICELAGIENIRCKIVGRTTPLTVVRATFQGLQMQ
ETHQELAERTGKYVVEFRNEEGNFPRIVAIPTEGAIQRRIEEETEHKQSE
DITLHFDPYRGAHKPKSLNQIQGTHPNVLADASST

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039866	XLOC_039866	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063606	TCONS_00063606	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013810	Ribosomal_S5_N
IPR005324	Ribosomal_S5_C
IPR014721	Ribosomal_S5_D2-typ_fold_subgr
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.20		coord: 162..223 e-value: 6.2E-14 score: 51.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 365..385
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..156
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 160..228
IPR013810	Ribosomal protein S5, N-terminal	PFAM	PF00333	Ribosomal_S5	coord: 164..227 e-value: 8.8E-16 score: 57.6
IPR013810	Ribosomal protein S5, N-terminal	PROSITE	PS50881	S5_DSRBD	coord: 163..226 score: 15.264
IPR005324	Ribosomal protein S5, C-terminal	PFAM	PF03719	Ribosomal_S5_C	coord: 240..309 e-value: 2.6E-19 score: 68.3
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 229..319 e-value: 6.3E-21 score: 73.5
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 233..311

Blast

[Close]

BLAST of TCONS_00063606-protein vs. Swiss-Prot (Human)
Match: RT05 (28S ribosomal protein S5, mitochondrial OS=Homo sapiens GN=MRPS5 PE=1 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 1.846e-55
Identity = 105/294 (35.71%), Postives = 169/294 (57.48%), Query Frame = 0

Query:   86 GDFLGFGKANIEWPGLTKPI----DLQRKPKQKRRDYEEYNA-------QFERRKRQFDATQRGWSGTTWPGRHAGAPEL-PSGDAVKDFDSIVIEVKKV-AVTRANGKRKRTSALVVVGNGKGSIGWAIGKATFASAAIRKARNKAVNYLHYVPVTEEKSIYHNLQTKVNSTQINFEKKVPGHGRRCQRIVRAICELAGIENIRCKIVGRTTPLTVVRATFQGLQMQETHQELAERTGKYVVEFRNEEGNFPRIVAIPTEGAIQRRIEEETEHKQSEDITLHFDPYRGAHKPK 366
            G  +G G+    WPGL  P+     +Q   ++ + + E+  A       +++R+K+     +RGWSG +W G   G P+  P G+  +DFD+ ++EV+ V  +T   G++K    LV VGNGKG+ G++IGKAT    A RKA+N+AV++LHY+   E+ +I+H++  +   T I  +K+  G+G RC R +  IC L GI+++  K+ G    L++ +  F+GL  QETHQ+LA++ G +VVE R E G  P +VA P  G +++  E E E     D+ L ++  + A   K
Sbjct:  129 GQIIGEGRYGFLWPGLNVPLMKNGAVQTIAQRSKEEQEKVEADMIQQREEWDRKKKMKVKRERGWSGNSWGGISLGPPDPGPCGETYEDFDTRILEVRNVFTMTAKEGRKKSIRVLVAVGNGKGAAGFSIGKATDRMDAFRKAKNRAVHHLHYIERYEDHTIFHDISLRFKRTHIKMKKQPKGYGLRCHRAIITICRLIGIKDMYAKVSGSINMLSLTQGLFRGLSRQETHQQLADKKGLHVVEIREECGPLPIVVASP-RGPLRKDPEPEDE---VPDVKLDWEDVKTAQGMK 418

The following BLAST results are available for this feature:

BLAST of TCONS_00063606-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063606-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RT05	1.846e-55	35.71	28S ribosomal protein S5, mitochondrial OS=Homo sa...	[more]

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TCONS_00063606-protein (polypeptide) - C. hemisphaerica