TCONS_00064050-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064050-protein
Unique Name	TCONS_00064050-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	260

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064050-protein ID=TCONS_00064050-protein|Name=TCONS_00064050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MSSNVVFDFSGKVVLVTGAASGIGQGTAYMFAKCGARLVVTDRDETNLKE
TAKKCEEMSKQKPLVIVGDLTVQSDLENIINTTMETCKQLDVLVNNAGDL
VMATCLQTSTEDFDKIMNINVRSVFQLTKMAIPHLKKTRGNIVNVSTLGS
SRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATEKCLN
STDANVKTAIERSKTTHALGRAGTVDEVAAAILFLASGAASYITGVTMPI
DGGRGDMIPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040158	XLOC_040158	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064050	TCONS_00064050	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 218..238 score: 39.55 coord: 134..150 score: 27.95 coord: 88..99 score: 53.51 coord: 181..198 score: 34.24 coord: 13..30 score: 46.79 coord: 160..179 score: 38.76
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 140..148 score: 41.75 coord: 88..99 score: 54.41 coord: 160..179 score: 38.82
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 18..253 e-value: 1.4E-62 score: 211.2
None	No IPR available	GENE3D	3.40.50.720		coord: 55..258 e-value: 1.0E-58 score: 198.3 coord: 4..54 e-value: 4.3E-13 score: 48.5
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 11..254

Blast

[Close]

BLAST of TCONS_00064050-protein vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 8.658e-38
Identity = 86/249 (34.54%), Postives = 132/249 (53.01%), Query Frame = 0

Query:    9 FSGKVVLVTGAASGIGQGTAYMFAKCGARLVVTDRDETNLKETAKKCEEMSKQKPLVIVGDLTVQSDLENIINTTMETCKQLDVLVNNAGDLVMATCLQTSTEDFDKIMNINVRSVFQLTKMAIPHL--KKTRGNIVNVSTLGSSRPQIGFSAYCMSKAALDQFTRAAAIELGADQVRVNCVNPSIIATE--KCLNSTDANVKTAIERSKTTHALGRAGTVDEVAAAILFLASGAASYITGVTMPIDGG 253
             +G+ VLVTGA  GIG+GT       GAR+V   R + +L    ++C  +   +P+ +  DL    D E      + +   +D+LVNNA   ++   L+ + E FD+   +N+R+V Q++++    L  +   G IVNVS+  S R     S YC +K ALD  T+  A+ELG  ++RVN VNP+++ T   +   S     KT + R      LG+   V+ V  AILFL S  +   TG T+P++GG
Sbjct:    5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI---EPVCV--DL---GDWEAT-ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240

The following BLAST results are available for this feature:

BLAST of TCONS_00064050-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064050-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCXR	8.658e-38	34.54	L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ...	[more]

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TCONS_00064050-protein (polypeptide) - C. hemisphaerica