TCONS_00064513-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064513-protein
Unique NameTCONS_00064513-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064513-protein ID=TCONS_00064513-protein|Name=TCONS_00064513-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
FQQLPDKSIGTLVKYYYTWKKSRNKKSLMDKSEARELAIINGIFADDSPN
DDSSDSDYEPVEKKSRSNKSTDKNTLNNHTMNHPIFQQQQQQHQQQSSHN
NLNNKPSPMLSTNCVNCAGVTPQMHSTPRGKMCVPCYEYWRRTGIIRPHD
KDNPISLYSAPQYKSKKKPPKGMSLGTEMLIDIAQSHGDSHVRPLEVELI
SLKRQIMTDKQILQEQTLALSGKVEQLRPLSLAQKLNSRWTNEELLIAVQ
CVRKYGKNFEAMAEVLGNKNESHCRSFFINHRRRFNLMEVLAEYEKENNI
PRDQSKLNDWSDEMPQEPHDAYGGMAPEGGPPPLVSNATSVTVSS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040460XLOC_040460Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064513TCONS_00064513Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR013088Znf_NHR/GATA
IPR017884SANT_dom
IPR009057Homeobox-like
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 236..284
e-value: 2.9E-7
score: 40.1
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 239..282
e-value: 2.3E-8
score: 34.0
IPR013088Zinc finger, NHR/GATA-typeGENE3D3.30.50.10coord: 110..154
e-value: 5.6E-5
score: 22.2
NoneNo IPR availableGENE3D1.10.10.60coord: 215..288
e-value: 2.3E-9
score: 36.6
NoneNo IPR availableGENE3D1.10.10.60coord: 2..26
e-value: 0.04
score: 13.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 302..345
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..107
NoneNo IPR availableCDDcd00167SANTcoord: 239..281
e-value: 2.24092E-6
score: 42.9478
IPR017884SANT domainPROSITEPS51293SANTcoord: 235..286
score: 14.983
IPR017884SANT domainPROSITEPS51293SANTcoord: 1..24
score: 6.541
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 234..286

Blast
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BLAST of TCONS_00064513-protein vs. Swiss-Prot (Human)
Match: RCOR3 (REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.073e-35
Identity = 65/136 (47.79%), Postives = 95/136 (69.85%), Query Frame = 0 
Query:  164 KSKKKPPKGMSLGTEMLIDIAQS--HGDSHVRPLEVELISLKRQIMTDKQILQEQTLALSGKVEQLRPLSLAQKLNSRWTNEELLIAVQCVRKYGKNFEAMAEVLGNKNESHCRSFFINHRRRFNLMEVLAEYEKE 297
            +SK +PPKGM L  E ++ ++ S    ++ +R L++ELISLKRQ+   KQ+       + G +E+ +P    QK+N+RWT EE L+AVQ VRKYGK+F+A+A+V+GNK     ++FF+N+RRRFNL EVL E+E E
Sbjct:  212 RSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAE 347
The following BLAST results are available for this feature:
BLAST of TCONS_00064513-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RCOR33.073e-3547.79REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 S... [more]
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