TCONS_00064836-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064836-protein
Unique NameTCONS_00064836-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length710

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064836-protein ID=TCONS_00064836-protein|Name=TCONS_00064836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=710bp
QMETDFLVEVQNEQVNVELQQANIRTELQSSISGGISDGKWHTLTLTIED
GDKISLYLGTDDGLVKSSKPLPKAEVTLEGDMFFGGLEDQNNGFNGNIRQ
VYMCGSEMNLAQDLENLKGGTQVGGNILNAPLALPPRPTLPPPTTIPPTT
TTTTTTTTTTTTTAAPTTTTTTQPPILTTTTTTTVPPTTTPEPDTTTPET
VTTTQEPATSTPEATTTPVETTTEFIVGPIEDTTTTTASTTTTTTTTTTT
PEVTTTPEPATTTPEPATTTPEPATTTPEPATTTPEPATTTPEPATTTPE
PETTTPEPTTTTTTTTTTTTTTTTTTTTTTPAPTTTAAPQCSSKLVPVAN
AYGFGFEDESYIEFGVMKGKLDTKADYEFSFYTMEEEGLLMSGFMKSPYD
YEAIYLAGGKAHYIFNAGAGSLTLSSKSTVNDGKWHTIKATRSKRAGTLY
VDGDIAAVGESKPGASAVNNINKVYFGGLPSTSLVIPKTPKTSQIPLKGG
MKDFKLFNEALVTPAASVGTSPAYNGLPYVNAVSFGANGGFAQKFKQLKI
GQNFKISFDVRAANKAGSLFYVYGGGDHLSVTVEENGSIKVTCNNGGGLF
SVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVTEETTTKSSTSADTN
SPAYFGGLPDNLRSNWSKISDSKDYKPFEGCISKVEINDEAIDFTSDVIK
NGAVMTGCPE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040667XLOC_040667Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064836TCONS_00064836Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001791Laminin_G
IPR013320ConA-like_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 239..264
score: 34.62
coord: 135..151
score: 42.35
coord: 175..196
score: 35.45
coord: 163..175
score: 38.46
coord: 196..212
score: 25.88
NoneNo IPR availableGENE3D2.60.120.200coord: 309..521
e-value: 7.5E-28
score: 97.2
NoneNo IPR availableGENE3D2.60.120.200coord: 522..710
e-value: 5.8E-30
score: 104.0
NoneNo IPR availableGENE3D2.60.120.200coord: 2..124
e-value: 2.4E-14
score: 53.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..340
NoneNo IPR availableCDDcd00110LamGcoord: 1..103
e-value: 4.69972E-8
score: 50.8797
NoneNo IPR availableCDDcd00110LamGcoord: 353..506
e-value: 1.5984E-25
score: 102.496
NoneNo IPR availableCDDcd00110LamGcoord: 532..688
e-value: 5.4738E-18
score: 80.9252
IPR001791Laminin G domainSMARTSM00282LamG_3coord: 373..509
e-value: 2.4E-21
score: 86.9
coord: 552..690
e-value: 3.4E-22
score: 89.7
IPR001791Laminin G domainPFAMPF02210Laminin_G_2coord: 562..689
e-value: 2.3E-15
score: 57.2
coord: 7..103
e-value: 9.7E-10
score: 39.0
IPR001791Laminin G domainPFAMPF00054Laminin_G_1coord: 381..510
e-value: 9.7E-23
score: 80.7
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 532..708
score: 29.453
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 351..527
score: 25.455
IPR001791Laminin G domainPROSITEPS50025LAM_G_DOMAINcoord: 1..126
score: 17.568
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 7..113
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 531..709
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 352..511

Blast
[Close]
BLAST of TCONS_00064836-protein vs. Swiss-Prot (Human)
Match: LAMA4 (Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4)

HSP 1 Score: 141.739 bits (356), Expect = 1.667e-34
Identity = 101/370 (27.30%), Postives = 175/370 (47.30%), Query Frame = 0 
Query:  348 VANAYGFGFEDESYIEFGVMKGKLDTKADYEFSFYTMEEEGLLMSGFMKSPYDYEAIYLAGGKAHYIFNAGAGSLTLSSKSTVNDGKWHTIKATRSKRAGTLYVDGDIAAVGESKPGASAVNNINK-VYFGGLPSTSLVIP-KTPKTSQI----PLKGGMKDFKLFNEALVTPAASVGTSPAYNGLPYVNAVSFGANGGFAQKFKQLKIGQNFKISFDVRAANKAGSLFYVYG-GGDHLSVTVEENGSIKVTCNNGGGLFSVAYKPEPSVCNGDIYSVLVEKKMKTLKLTVNGAVTEETTTKSSTSADTNSPAYFGGLPDNLRSNWSKISDSKDYKPFEGCISKVEINDEAIDFTSDVIKNGAV-MTGCP 709
            + +AY +G    S  EF  +KG    K+ +     T    G++     +   D+  ++LA G+  Y+FN G   L + S+   NDG WH +   R + +G L +DG +  + ES P   A   I   +Y GG      V P K  K  QI       G + + +L   ++ + + +   +P + G P      F   GG+    +   IG  F+I+F+VR  + +G+L + +   G++L+V + +NG + V  NNG   FS +  P+ S+C+G  + + V +    ++L V+  V       +    D   P + GG+P++L +   +++ S   KPF GCI    I+   + F+   + +GAV +  CP
Sbjct: 1466 IEHAYQYGGTANSRQEFEHLKGDFGAKSQFSIRLRTRSSHGMIFYVSDQEENDFMTLFLAHGRLVYMFNVGHKKLKIRSQEKYNDGLWHDVIFIRERSSGRLVIDG-LRVLEESLPPTEATWKIKGPIYLGG------VAPGKAVKNVQINSIYSFSGCLSNLQLNGASITSASQTFSVTPCFEG-PMETGTYFSTEGGYVVLDESFNIGLKFEIAFEVRPRSSSGTLVHGHSVNGEYLNVHM-KNGQVIVKVNNGIRDFSTSVTPKQSLCDGRWHRITVIRDSNVVQLDVDSEVNHVVGPLNPKPIDHREPVFVGGVPESLLT--PRLAPS---KPFTGCIRHFVIDGHPVSFSKAALVSGAVSINSCP 1821
The following BLAST results are available for this feature:
BLAST of TCONS_00064836-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAMA41.667e-3427.30Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 P... [more]
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