TCONS_00065217-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065217-protein
Unique NameTCONS_00065217-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length431

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065217-protein ID=TCONS_00065217-protein|Name=TCONS_00065217-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MKARKNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINC
IDFLEPSLANSVIALTHGKGASSQMMLKETKDPEDGLKTCIRCLNLLERQ
NKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSVNAGETEYSL
QLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFA
SSYLADNMFTLPGLPSQDKYDAMLKEKEKQRERMKQEKMLQAAKSKVSSL
NRGKNNNFDSLDSGQPTGNQSRDPSAERSIPNVPDNAHVDSTSGRTSVTG
LNIRDRLSGKHKERQKFIGDSTDPDGEYHQGGPSTSGPRIRDRFNRAMNE
FVDDVKHTTHSAIQAISISKPTETSWGPAQVQVDDDSDPILQQIQIIESY
IKQARDDGRWEEVKMFEQNLQELHMVRQADR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040888XLOC_040888Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065217TCONS_00065217Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000306Znf_FYVE
IPR021565Rbsn_Rab_binding_dom
IPR013083Znf_RING/FYVE/PHD
IPR017455Znf_FYVE-rel
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 217..246
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..341
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 9..99
e-value: 4.5E-7
score: 39.5
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 13..97
e-value: 9.4E-17
score: 60.8
IPR021565Rabenosyn, Rab binding domainGENE3D4.10.860.20coord: 388..426
e-value: 4.1E-14
score: 51.4
IPR021565Rabenosyn, Rab binding domainPFAMPF11464Rbsncoord: 389..424
e-value: 9.2E-12
score: 44.4
IPR021565Rabenosyn, Rab binding domainSUPERFAMILY140125Rabenosyn-5 Rab-binding domain-likecoord: 385..424
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..104
e-value: 3.1E-17
score: 61.6
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 17..98
score: 9.756
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 13..108

Blast
[Close]
BLAST of TCONS_00065217-protein vs. Swiss-Prot (Human)
Match: RBNS5 (Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.450e-37
Identity = 87/291 (29.90%), Postives = 148/291 (50.86%), Query Frame = 0 
Query:    5 KNVEKTCVPWQEDKEVKFCPSCEKKFTLTFRRTHCRLCGQVYCINCIDFLEPSLANSVIAL------THGKGASS------------------QMMLKETKDPEDGLKTCIRCLNLLERQNKVFQDKTANELLVKSYERMKSAMQNADLIQPKFLKMADSVNAGETEYSLQLAMETRHKLLKQYETIESLSKHIQQLGIGTNKEPGPRARKLQASIRAFASSYLADNMFTLPGLPSQDKY--------------DAMLKEKEKQRERMKQEK----MLQAAKSKVSSLNRG 253
            + +EK+ VPW  D++V FCP C  KF++  RR HCRLCG + C  C++ +   LAN + +       TH   + S                    +L E  D  D ++ C  C + L ++ +   +K     +VK YE+++  M+  D   P++++MA S+NAGET YSL+ A + R ++ K YE I++LSK I  LG+  +  P P   +LQ  IR  A+ ++ + +  L  LP+++++               A+ ++   + +R  +E+      +AA  +V+SL RG
Sbjct:  145 RAIEKSVVPWVNDQDVPFCPDCGNKFSIRNRRHHCRLCGSIMCKKCMELISLPLANKLTSASKESLSTHTSPSQSPNSVHGSRRGSISSMSSVSSVLDEKDD--DRIRCCTHCKDTLLKREQQIDEKEHTPDIVKLYEKLRLCMEKVDQKAPEYIRMAASLNAGETTYSLEHASDLRVEVQKVYELIDALSKKILTLGLNQDPPPHPSNLRLQRMIRYSATLFVQEKLLGLMSLPTKEQFEELKKKRKEEMERKRAVERQAALESQRRLEERQSGLASRAANGEVASLRRG 433
The following BLAST results are available for this feature:
BLAST of TCONS_00065217-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBNS58.450e-3729.90Rabenosyn-5 OS=Homo sapiens GN=RBSN PE=1 SV=2[more]
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