SOX2 (polypeptide) - C. hemisphaerica

Overview
NameSOX2
Unique NameTCONS_00065268-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length496

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065268-protein ID=TCONS_00065268-protein|Name=SOX2|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MMLLDKRATYDKTKTYTLDELMEMSNLEPAGHHAKPNHIKRPMNSFMVWS
RMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHI
QEHPEYKYRPRRKPKLSVPTQHHVRKHQSTAAGKTVPIPIPEYIPSRSGS
RPAVVPVYYHSPHYIQHPGSTREGHPVHYPTTAREVRYYRPRSPDYNGRS
RSPVDRDREYRHSPGVVYRSYSPPPQPREAYYYQSRSEAKQNSYHDDEPS
DGENKTDTNTEETNNNNTEKKSSSGENNHDENDNVKASTTTVTKPRKKGV
DDLLGLKLRKQAQQKEQEEESEKEKNERKEEANTTVEKRESRNSGSKPVY
YKYERYTSPPPPSHHREYRQGSSYMVPVPIVLHPHSSHGEICYKDCCMVP
ATSYYPHHPHEGVEYRRTYSSDKTRCYSPDYESGSSKKTYVVYGERPPSS
SPPTPMVAARSRSPSPPQQTEKREKTPPSKEKSPQSSPKDTGNETD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040922XLOC_040922Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065268TCONS_00065268Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 307..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 416..496
NoneNo IPR availableCDDcd01388SOX-TCF_HMG-boxcoord: 38..109
e-value: 3.52571E-31
score: 113.932
IPR009071High mobility group box domainSMARTSM00398hmgende2coord: 38..108
e-value: 9.9E-26
score: 101.5
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 39..107
e-value: 2.2E-23
score: 82.3
IPR009071High mobility group box domainGENE3D1.10.30.10coord: 32..138
e-value: 2.1E-30
score: 104.6
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 39..107
score: 21.927
IPR009071High mobility group box domainSUPERFAMILY47095HMG-boxcoord: 36..114

Blast
[Close]
BLAST of SOX2 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.549e-36
Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 0 
Query:   37 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 115
            +HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR  H++EHP+YKYRPRRKPK
Sbjct:    6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84
The following BLAST results are available for this feature:
BLAST of SOX2 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SOX149.549e-3670.89Transcription factor SOX-14 OS=Homo sapiens GN=SOX... [more]
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