TCONS_00065365-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065365-protein
Unique NameTCONS_00065365-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length141

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065365-protein ID=TCONS_00065365-protein|Name=TCONS_00065365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MPPKSKKVKVKKPQAAPFTTKGAKTTKKTSNVLIEKRPRNFGIGGDIQPK
RDLGRFVLWPKYIKLQRQKRILYQRLKVPPSINQFTQTLDQQTATQLFKL
LHKYRPETKAEKKARLTAQAESKAAGKQETAGKKXTPALIY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040981XLOC_040981Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065365TCONS_00065365Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001921Ribosomal_L7A/L8
IPR029064L30e-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001921Ribosomal protein L7A/L8PRINTSPR00882RIBOSOMALL7Acoord: 99..112
score: 75.97
coord: 75..94
score: 76.36
coord: 38..55
score: 73.23
coord: 55..72
score: 69.19
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 94..139
e-value: 2.2E-4
score: 20.5

Blast
[Close]
BLAST of TCONS_00065365-protein vs. Swiss-Prot (Human)
Match: RL7A (60S ribosomal protein L7a OS=Homo sapiens GN=RPL7A PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 3.271e-50
Identity = 79/108 (73.15%), Postives = 89/108 (82.41%), Query Frame = 0 
Query:   27 KKTSNVLIEKRPRNFGIGGDIQPKRDLGRFVLWPKYIKLQRQKRILYQRLKVPPSINQFTQTLDQQTATQLFKLLHKYRPETKAEKKARLTAQAESKAAGKQETAGKK 134
            KK  N L EKRP+NFGIG DIQPKRDL RFV WP+YI+LQRQ+ ILY+RLKVPP+INQFTQ LD+QTATQL KL HKYRPETK EKK RL A+AE KAAGK +   K+
Sbjct:   25 KKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKR 132
The following BLAST results are available for this feature:
BLAST of TCONS_00065365-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL7A3.271e-5073.1560S ribosomal protein L7a OS=Homo sapiens GN=RPL7A... [more]
back to top