TCONS_00065953-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065953-protein
Unique NameTCONS_00065953-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length205

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065953-protein ID=TCONS_00065953-protein|Name=TCONS_00065953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MRVFSAYIKEIESKPESTNWGKKMPFGNMMGEWSNGRGGWVHDVAFSPSG
AKVGWVGHDSSISVVQGGETEPVVLPLNNLPFVTCLFISESALVAAGHDY
VPMTFSHDDNNKLTFMAKLDQPAQKSGDEEETMSAMQRFRSLDKRATTGS
KPGKSSTTHNNMIKQLSVYASDGSGISQISSGGMDGKIVLWNLKTLEKSI
ADLKI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041318XLOC_041318Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065953TCONS_00065953Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 2..205
e-value: 1.2E-15
score: 56.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..162
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 179..193
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 145..198
coord: 12..118

Blast
[Close]
BLAST of TCONS_00065953-protein vs. Swiss-Prot (Human)
Match: ARC1A (Actin-related protein 2/3 complex subunit 1A OS=Homo sapiens GN=ARPC1A PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.528e-63
Identity = 99/207 (47.83%), Postives = 136/207 (65.70%), Query Frame = 0 
Query:    1 MRVFSAYIKEIESKPESTNWGKKMPFGNMMGEWS-NGRGGWVHDVAFSPSGAKVGWVGHDSSISVVQGGETEPV-VLPLNNLPFVTCLFISESALVAAGHDYVPMTFSHDDNNKLTFMAKLDQPAQKSGDEEETMSAMQRFRSLDKRATTGSKPGKSSTTHNNMIKQLSVYASDGSGISQISSGGMDGKIVLWNLKTLEKSIADLKI 205
             RVFSAYIKE++ KP ST WG KMPFG +M E+  +G GGWVH V+FS SG+++ WV HDS++SV    ++  V  L    LP ++  F+SE+++VAAGHD  PM F++DD   LTF++KLD P Q     +  MSAM+RFR++DKRATT  +     T H N I Q+S+Y  D     +  + G+DG + +W+ KTLE SI  L+I
Sbjct:  166 CRVFSAYIKEVDEKPASTPWGSKMPFGQLMSEFGGSGTGGWVHGVSFSASGSRLAWVSHDSTVSVADASKSVQVSTLKTEFLPLLSVSFVSENSVVAAGHDCCPMLFNYDDRGCLTFVSKLDIPKQSI---QRNMSAMERFRNMDKRATTEDRNTALETLHQNSITQVSIYEVDKQDCRKFCTTGIDGAMTIWDFKTLESSIQGLRI 369
The following BLAST results are available for this feature:
BLAST of TCONS_00065953-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARC1A1.528e-6347.83Actin-related protein 2/3 complex subunit 1A OS=Ho... [more]
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