TCONS_00066069-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00066069-protein
Unique NameTCONS_00066069-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00066069-protein ID=TCONS_00066069-protein|Name=TCONS_00066069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=580bp
MRTLKEMGVEAVCRVYDPFNIHGMSLTMLLKHADGWDYTRFLLLLSPFDR
DLFKDFLNNTGSREPYRIFTPDVAALNRNSFYLENNMIQDIGNAPNDSEA
NLSFLSAEWRNNENISFRYEAFPQKWKRKIIRVTSSIFPPYNNVLKEKPT
KFGQCINAGHLCRVPIKRGNITEGWRECCCGGIAVSLFDLITKQLNIKYD
LYLVEDNKFGGKNVTGGWNGMIGELINNKADIAINGFNPTRERLKEVSFT
SAYQHDYLSFVKRKLSFEEIDFVNWEFVRTMESDLALWILFSTVFSATFI
VFSENIGYLLRSKKYFSTREVMTYIFGLAFQRDMGGRNPLRWGGRVVALS
YAASMTVIMTTYTAHLTAKNIQIVPKNTFLGLKDQRLLKPTDDFKIALMS
ATSFEAMFRDGSEDYKRFWAFSKKYAVSSNSEGVEKVYTGELDAFIIEAI
ASRTITSHSKYCENLEVFVENKTQMEVSFPYRKDFPLGEEISRQILKVRE
DYKIKDIIERWVYIPQCTSSMKNFTKFDVNYFGGIIFICAILLLVSIFLI
LAENFHTHVKMRRRTRCRQRSSTSITNISF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041369XLOC_041369Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00066069TCONS_00066069Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019594Glu/Gly-bd
IPR001320Iontro_rcpt
Vocabulary: Molecular Function
TermDefinition
GO:0005234extracellular-glutamate-gated ion channel activity
GO:0004970ionotropic glutamate receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0005234 extracellular-glutamate-gated ion channel activity
molecular_function GO:0004970 ionotropic glutamate receptor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainSMARTSM00918Lig_chan_Glu_bd_2coord: 165..227
e-value: 1.0E-12
score: 58.2
IPR019594Ionotropic glutamate receptor, L-glutamate and glycine-binding domainPFAMPF10613Lig_chan-Glu_bdcoord: 177..264
e-value: 1.3E-18
score: 67.1
IPR001320Ionotropic glutamate receptorSMARTSM00079GluR_14coord: 161..514
e-value: 1.2E-6
score: -2.5
NoneNo IPR availableGENE3D3.40.190.10coord: 126..288
e-value: 2.0E-19
score: 69.0
NoneNo IPR availableGENE3D3.40.190.10coord: 362..474
e-value: 9.5E-11
score: 41.6
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 377..513
coord: 177..265

Blast
[Close]
BLAST of TCONS_00066069-protein vs. Swiss-Prot (Human)
Match: NMDZ1 (Glutamate receptor ionotropic, NMDA 1 OS=Homo sapiens GN=GRIN1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 9.154e-30
Identity = 96/402 (23.88%), Postives = 174/402 (43.28%), Query Frame = 0 
Query:  179 CCGGIAVSLFDLITKQLNIKYDLYLVEDNKFGGKNVTGG-----WNGMIGELINNKADIAINGFNPTRERLKEVSFTSAYQHDYLS-FVKRKLSFEEIDFVNWEFVRTMESDLALWILFSTVFSATFIVFSENIGYLLRSK--------KYFSTREVMTYIFGLAFQRDMGGRNPLRWGGRVVALSYAASMTVIMTTYTAHLTAKNIQIVPKNTFLGLKDQRLLKPTDDFKIALMSATSFEAMFRDGSEDYKRFWAFSKKYAVSSNSEGVEKVYTGELDAFIIE-AIASRTITSHSKYCENLEVFVENKTQMEVSFPYRKDFPLGEEISRQILKVREDYKIKDIIERWVYIPQCTSSMKNFTKFDVNYFGGIIFICAILLLVSIFLILAE-NFHTHVKMRRR 564
            CC G  + L   + + +N  Y+++LV D KFG +          WNGM+GEL++ +AD+ +       ER + + F+  +++  L+  VK+++    +D     F++  +S L L +  S    A  +   +      R K           +    M + +G+     +G   P  +  R++ + +A    +I+ +YTA+L A  +   P+    G+ D RL  P+D F  A +  +S +  FR   E     +   +K+   S +E ++ V   +L AFI + A+     +         E+F  +          RKD P  + +S  ILK  E+  ++D+ + WV   +C S              G+  + A  ++  IFLI  E  +  H   RR+
Sbjct:  454 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKEIPRSTLD----SFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFSPFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIVASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVE-LSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSG----FGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGIVAGIFLIFIEIAYKRHKDARRK 846
The following BLAST results are available for this feature:
BLAST of TCONS_00066069-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NMDZ19.154e-3023.88Glutamate receptor ionotropic, NMDA 1 OS=Homo sapi... [more]
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